Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0031 ATGGCATCTAATGACCCCTCACCATCTTTGGAGATATTAGTTCGAGCACCAGAAGAATTCTCACTCTGGACAGGGCCCCCCTTTGTCAATGGTCAACCTCTTGTCAAGCTTGAAAAAGTTACTTGCTTGAATACAAAATTCAGTGAAAATGGGTCGAAACTCATGGTGATGAAACCCCACTCTTTCATTACTATCTATGATTCCAGAAGCGCTCTAGAGATTAGATCTTTTGAAGTCCCCAATGTTGCTGCCGCTGTCTTGTCCCCTTGTGGAACTTATTTGCAAACCTTTCAAAAATCCTCAGCGCCCCACGAAAAGAATCTGACTTTATGGAAAACAGAGACTGGTGATCCTGTTTATCAACACTTCCAAAAGAACATGACAAAAACCACTTGGCCCTCGATTCAATTTAGCTCTGATGAAGCTGTTGCATGCCGCCTGGCAACTAATGAGGTACAATTTTTTGACAAGGGGGATTTCTCCAAAGGAGTTATCCATAGGTTAAAAATTCCAGGAGTTGCTGCAATTGAGCTTTCTAGAACCCCTGGGTCTCATGTAGCTGCATTTGTTCCAGAGTCCAAGGTTTGCATCCCAAAATTGTATCCTTATAATGGAGGCTCACTTTACTTTTCTGATGCAATGAATGAGAAATTGGGGGTTCCTGCAAGTGTACAGATATTTTCTTGTGGAAAAGATTCTCAAAGTCAACCTTTTGCCAGACGAAGCTTTTTTCGATGCTCAACTGTCCAACTTAGTTGGAATCTTGGCTCTTCTGGACTGCTAGTGGTGGTGCAATCAGATGTTGATAAAACCAATCAGAGTTACTATGGAGAATCGAAGTTATGCTACCTGACAACAGATGGGACGCATGAAGGACTAGTGCCTCTTCGTAAAGAGGGACCTGTTCATGATGCCCAGTGGTCATATTCTGGCTTGGAATTTGCTGTTGTATATGGATGTATCCTTTTTCTCTGTGGCATGCACATTATGCCTGCTAAAGCAACTCTGTTTGACAAGAAGTGCAATCCTCTACTGGAGCTTGGAACTGGTCCTTACAATACAATTCGATGGAATCCAAAAGGAAAATGTAATATGGTATTCTGGGATTATATAGAGAGGAAACAGATCGGAACGACTAAGGCTGAATGGTCTGTGACAAGTGAATGGTCTCCTGATGGATGCTATTTCATGACAGCCACAACAGCTCCAAGGCTTCAAGTTGATAATGGGATCAAGATTTTCCACTATAATGGGTCATTGTACTTCAAGAAGATGTTTGACAAATTGTATCAGGCTGACTGGAAACCAGAGTCACCAAATAAGTTTGGTGACATTGCTGAATTAATCAAGTCACTAGGCATGGTAAAAGTTGAAGACAGCAAACCAACAGGTCAACGGCCAAAATCAACACAAACTTCTATAAAAACCTCTTCTGCCAACCCTCCTGCGCAGAAACCTGCTGCATACTGCCCCCCTCATGCTAAGAAGGCAGCTACTATTCAGGCAGAGTTGTTTGGAAATAGCCCCACAGACACACTGATTTTAGTTGCCACACTCAATAGCAAGGTGGTTTCGGCTGCTTGGTTTGGCATAAGTGTGATTGTAGGTAATGTAACTGCAACCGCACAGGAATATTCTTGTGCATCAAGTAATGCAAGTGCAGATTCACTTGGAGTTGTTCACACAACTTGTCAGAGTAACATGACATTTTGTTCCAAAGGTAGATGTGAGTCAGTTCAAGCTGTGGAGCTTGGTTCTGTCAACAGTGGGGAAAGAGCTGCAAATACCAATCCTTTGAATGGTAGAGTTATGCTCGTTGATGGCACGTCAATAATTTATAGGGCATACTACAAACTTTTAGCAAAGTTGCATCATGGTCATCTAACACATGCTGACGGAAATGGAGATTGGGTTTTGACAATATTTACGGCTCTATCACTTATAATTGATGTTCTGGAATTTATCCCTTCCCATGTGGCGGTGGTATTTGACCATGATGAATTTCTTTACACTCAACTATGGTCTTATGCAGAAGCTGGTTTGCAAATGCCTCCAGAAGTTATTGACCTACTGGTAGTTTCTTGCCACCATTTTAAGGATGTTAAACGCTCCTCATTTTTAAGCCTCACTTTCTCCCCAAAACTTGCATTTCTTAGGTGCTTGGTTTGTAAAGCTGCGCTCAGTTATATACGGGTGATATACGGTGGACCTTTTGAGGTTGGTATGGAGATGATATGTGTGGGTAAATTGGTACCAGGTGTAGAAGCGGATGATGTCATTGGAACATTGGCTTTAAGGAGTGTTGATGCTGGGTACAAGGTACGGGTTGTCTCCCCAGACAAAGACTTTTTTCAGATATTATCTCCTTCGCTACGTCTACTCAGAATTGCTCCACGAGGCGACCAGTTAGTATCAGACATGGTTTCTGCTTTTATGATGGTTTCATTTGGGATAGAGGAATTTGCAAAACGATATGGAGCTCTGAAACCTTCTCAGTTTGCTGATATGATCGCACTTTCTGGTGACAGATCTGATAATATTCCAGGAGTTGATGGAATTGGAGATGTTCATGCAGTAAAATTGATCAGTAAATTTGGTACATTGGAGAGGTTGTTGGGATGCGTTGATCAAATAACAGAGGAACGCATTAGAGAGGCCTTGATTGCAAATGCTGATCAGGCTCTCTTAAGCAAGGAACTGGCATTGCTGCGTTCTGATCTTCCGTCCTACATGGTACCATTTGCTACAAGTGATCTCTCATTTAAGAAACCAGAGGACAATGGCAACAGATTCAACGGCCTCTTAACAGCCATCAGTGCTTATGCAGAAGGGTTTTCAGCTGATCCTATAATCAGGAGAGCATTTCATTTGTGGAGAAAGTTGGATTCGAGGAAACACACCATGAGGTTTTCTGGTGTGGAGATCAACGCACTAATTGTTATGGCTCTGCAGTGTAATACAATTTTCGATTCTGCTGGCTAA 2982 0.4225 MASNDPSPSLEILVRAPEEFSLWTGPPFVNGQPLVKLEKVTCLNTKFSENGSKLMVMKPHSFITIYDSRSALEIRSFEVPNVAAAVLSPCGTYLQTFQKSSAPHEKNLTLWKTETGDPVYQHFQKNMTKTTWPSIQFSSDEAVACRLATNEVQFFDKGDFSKGVIHRLKIPGVAAIELSRTPGSHVAAFVPESKVCIPKLYPYNGGSLYFSDAMNEKLGVPASVQIFSCGKDSQSQPFARRSFFRCSTVQLSWNLGSSGLLVVVQSDVDKTNQSYYGESKLCYLTTDGTHEGLVPLRKEGPVHDAQWSYSGLEFAVVYGCILFLCGMHIMPAKATLFDKKCNPLLELGTGPYNTIRWNPKGKCNMVFWDYIERKQIGTTKAEWSVTSEWSPDGCYFMTATTAPRLQVDNGIKIFHYNGSLYFKKMFDKLYQADWKPESPNKFGDIAELIKSLGMVKVEDSKPTGQRPKSTQTSIKTSSANPPAQKPAAYCPPHAKKAATIQAELFGNSPTDTLILVATLNSKVVSAAWFGISVIVGNVTATAQEYSCASSNASADSLGVVHTTCQSNMTFCSKGRCESVQAVELGSVNSGERAANTNPLNGRVMLVDGTSIIYRAYYKLLAKLHHGHLTHADGNGDWVLTIFTALSLIIDVLEFIPSHVAVVFDHDEFLYTQLWSYAEAGLQMPPEVIDLLVVSCHHFKDVKRSSFLSLTFSPKLAFLRCLVCKAALSYIRVIYGGPFEVGMEMICVGKLVPGVEADDVIGTLALRSVDAGYKVRVVSPDKDFFQILSPSLRLLRIAPRGDQLVSDMVSAFMMVSFGIEEFAKRYGALKPSQFADMIALSGDRSDNIPGVDGIGDVHAVKLISKFGTLERLLGCVDQITEERIREALIANADQALLSKELALLRSDLPSYMVPFATSDLSFKKPEDNGNRFNGLLTAISAYAEGFSADPIIRRAFHLWRKLDSRKHTMRFSGVEINALIVMALQCNTIFDSAG 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0031 993 Gene3D - 727 817 - -
Glsi04g0031 993 Gene3D - 593 704 - -
Glsi04g0031 993 Pfam 5'-3' exonuclease, N-terminal resolvase-like domain 602 802 IPR020046 GO:0003677
Glsi04g0031 993 Pfam Eukaryotic translation initiation factor eIF2A 241 432 IPR013979 -
Glsi04g0031 993 CDD H3TH_53EXO 830 903 IPR020045 GO:0003677|GO:0003824
Glsi04g0031 993 SUPERFAMILY PIN domain-like 597 796 IPR029060 -
Glsi04g0031 993 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2A 10 500 IPR011387 GO:0003743|GO:0006413
Glsi04g0031 993 CDD PIN_53EXO 605 806 - -
Glsi04g0031 993 Pfam 5'-3' exonuclease, C-terminal SAM fold 829 925 IPR020045 GO:0003677|GO:0003824
Glsi04g0031 993 MobiDBLite consensus disorder prediction 458 488 - -
Glsi04g0031 993 MobiDBLite consensus disorder prediction 464 483 - -
Glsi04g0031 993 Gene3D - 830 916 - -
Glsi04g0031 993 SMART HhH_4 830 865 IPR008918 GO:0003677|GO:0003824
Glsi04g0031 993 SUPERFAMILY DPP6 N-terminal domain-like 42 404 - -
Glsi04g0031 993 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 828 918 IPR036279 -
Glsi04g0031 993 FunFam DNA polymerase I 830 918 - -
Glsi04g0031 993 SMART 53exo3 601 922 IPR002421 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0031 Glsi-ChrGlsi04 362702 383273 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0031 131 440 Eukaryotic Initiation Factors Gene Family AT5G27640 22.769 2.09e-09 59.7