Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0028 ATGACAGCCAGCTCTTTCTGCAATGCCGACTCCGTGTTTTCGAGAGAAGAGGGTATAAATATTAAAAAGATGATGGAACAGAAAAGGAGCCTCTGCTCTGTGGATCAAAGCAGTTATACCTCTATTGCATCTAAAAGACACAAGGCTGATTTATCTATAACCACGAAGGAGAGAAAGGAGAAGATTGGGGAACGAGTTGTTGCCCTACAGCAGCTTGTTTCACCATTTGGGAAGTCAGATACAGCTTCTGTCCTCTACGAGGCAACGCAATACATAAAGTTCCTTCATGATCAAGTTAAGGTGCTTAGTGCTCCTTATCTCCAATGTTCTTCAACAACTAAAATGCAGGATATAGAGCCTTACAGCCTGAGGAATAGAGGATTATGTCTTGTTCCAGTCTCGTATACGATTGGAGTTACTCGGAGCAATGGTGCAGATATATGGGCCCCCATCAAGACCACTTCCCCAAAATTTGACAAGCCTATCTCGCAATTTCATTGA 501 0.4291 MTASSFCNADSVFSREEGINIKKMMEQKRSLCSVDQSSYTSIASKRHKADLSITTKERKEKIGERVVALQQLVSPFGKSDTASVLYEATQYIKFLHDQVKVLSAPYLQCSSTTKMQDIEPYSLRNRGLCLVPVSYTIGVTRSNGADIWAPIKTTSPKFDKPISQFH 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0028 166 Gene3D - 43 118 IPR036638 GO:0046983
Glsi04g0028 166 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 95 IPR011598 GO:0046983
Glsi04g0028 166 FunFam Transcription factor bHLH113 family 45 121 - -
Glsi04g0028 166 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 37 136 - -
Glsi04g0028 166 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 52 111 IPR036638 GO:0046983
Glsi04g0028 166 CDD bHLH_AtbHLH_like 52 103 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0028 Glsi-ChrGlsi04 335670 339154 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0028 24 158 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05710 54.430 4.49e-55 169