Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0007 ATGGATTCATACTTCATAGTCTTTCCAAATACAAATTGGGCCCTAGGGAAGTGGGGGAAGCTGAAGGGAGAATTTGTTGCAGATTTTATTAGGGATGGGCAATGGCATTTAGATGAGTTAGCAAATAGGTGGACAAGGGATGGAATTGATGCCATTCGAAGAGTGCCTATTTCTAAGCAAAATCTAGATGATAAGATGGTTTGGGAAAATAATAGAAATGGCGCATATACTGCGAAATTTGGGGTATATGTTAGTTCAGGTTCTCTCACCAACTTCTCCTTCATAGATCATGATGCTCATTATGAAATATCTGGTCAAGAGGCGTTTAGTTTGAGGGGTCTCTATCCCTTCGTAAGGGCAATATCTCTTGAAGCCCTTTCTGAAGCTGGAACAGTAAAAGCGAATACAGATGGATCTTTTCTAAAATGGTGTCCGGTATGGGGGTGGTGTTTAGAGACCACAATGGCAAGGTGCAGGGTAGACCGGAAATTAGGATTGCCGCGTTTCAAACGTCGAGATGTATCATTAGAAAATGAGAGAACGGCTTTATCGGGAGGGTGTGTGGAAACAAAAGCTTTTGACAAGAAAAAATCACTCCCTCAATATCTGTCATACAGCTGCGAGCGCACTAATCTATATCTGGTCTTACGATATCAACCAGGCCTCCGGTTTGAAGGAGATCTAATCCTTTCTTCGTATCTCCTTCACCCGCCCAAGCACTCGATCCCAACAAACATATATAGCTCTGCAACCATCCATCCCTTTTCAGTTCGTACCTTTGTGCGCTTGAGATTCGATTCCGAGGAAGCTATGGAAAACATTGCCGCGCAATTGAAGCGCGGCATCTCGCGCCAATTCTCCACCGGCTCTGTGCGTAGGAGTCTGAGCCGGCAGTTCACGCGGCAGTCGTCCTTAGATCCCAGACGAAACAATCTCAGGTTCAGCTTCGGTCGCCAGTCGTCACTCGATCCGATTCGCCGCAGTCCGAGTGATGACAGTGAGCTGACGGTGCCGGAGAACCTCGACTCCACGATGCAGTTGCTGTTCATGGCCTGCAGAGGGGACGTGAAGGGAGTGGAGGATTTGCTAAATGAGGGTATTGATGTTAATAGCATTGATTTGGATGGCCGCACCGCGTTGCATATCGCCGCCTGTGAAGGACATGTGGAGGTTGTAAAGCTCTTGCTCAGCCGTAAGGCTAATATTGATGCTCGTGATCGTTGGGGCAGTACGGCTGCTGCTGACGCCAAATACTATGGTAATACAGAAGTTTACAATATATTGAAGGCCCGCGGAGCCAAAGTGCCGAAAACCAGGAAGACACCGATGTCAGTTGCAAATCCTCGTGAAGTCCCAGAATATGAACTTAATCCTTTAGAACTCCAGGTCCGGAAGAGTGATGGTATCTCAAAGGGTACATATCAAGTAGCTAAATGGAATGGCACAAAGGTTGCAGTAAAGATCCTTGATAAGGACAGTTATTCGGACCCGGACAGCATAAATGCTTTCAAACATGAACTCACATTGTTAGAAAAAGTACGACATCCTAATGTGGTCCAGTTCGTTGGGGCTGTCACCCAGAATATACCCATGATGATTGTTTCAGAGTATCATCCTAAGGGTGACCTAGCAAGCTATCTTCAAAAGAAAGGGCGTCTATCCCCATCAAAAGCTCTACGGTTTGCCCTTGATATAGCTAGGGGCATGAACTATCTTCATGAATGTAAACCGGATCCAATTATCCACTGTGATTTAAAGCCAAAAAATATTTTGCTGGATAATGGAGGGCAGTTGAAGGTAGCTGGATTTGGCATGGTAAGATTGTCAAAAATGTCACCTGATAGAGCAAGGCTGGTGCAGCCTGAGGCTAACATTGACCTTTCAAGTTTGTACGTGGCCCCAGAGGTTTACAAAGATGATATATTTGATAGAAGTGTGGATGCATATTCTTTTGGTCTTATTGTATATGAGATGATAGAGGGTATACAGCCCTTCCACCCGAAGTCTCCGGAGGAGGCCTTGAAACTGATGTGTGTAGAAGGAAAAAGACCACCATTCAAGATCAAAACAAAAAGTTATCCTCCAGATTTGAAAGAGTTGATTGAGGAATGTTGGGATCCAGAACCTGTTGTCAGGCCAACATTTTCTGAGGTCATTGTACGATTGGACAAAATTGTTGCAAACTGCTCAAAACAAGGATGGTGGAAAGATACTTTTAAGCTTCCTTGGAAATAA 2235 0.4488 MDSYFIVFPNTNWALGKWGKLKGEFVADFIRDGQWHLDELANRWTRDGIDAIRRVPISKQNLDDKMVWENNRNGAYTAKFGVYVSSGSLTNFSFIDHDAHYEISGQEAFSLRGLYPFVRAISLEALSEAGTVKANTDGSFLKWCPVWGWCLETTMARCRVDRKLGLPRFKRRDVSLENERTALSGGCVETKAFDKKKSLPQYLSYSCERTNLYLVLRYQPGLRFEGDLILSSYLLHPPKHSIPTNIYSSATIHPFSVRTFVRLRFDSEEAMENIAAQLKRGISRQFSTGSVRRSLSRQFTRQSSLDPRRNNLRFSFGRQSSLDPIRRSPSDDSELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSRKANIDARDRWGSTAAADAKYYGNTEVYNILKARGAKVPKTRKTPMSVANPREVPEYELNPLELQVRKSDGISKGTYQVAKWNGTKVAVKILDKDSYSDPDSINAFKHELTLLEKVRHPNVVQFVGAVTQNIPMMIVSEYHPKGDLASYLQKKGRLSPSKALRFALDIARGMNYLHECKPDPIIHCDLKPKNILLDNGGQLKVAGFGMVRLSKMSPDRARLVQPEANIDLSSLYVAPEVYKDDIFDRSVDAYSFGLIVYEMIEGIQPFHPKSPEEALKLMCVEGKRPPFKIKTKSYPPDLKELIEECWDPEPVVRPTFSEVIVRLDKIVANCSKQGWWKDTFKLPWK 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0007 744 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 336 725 - -
Glsi04g0007 744 Pfam Protein tyrosine and serine/threonine kinase 469 721 IPR001245 GO:0004672|GO:0006468
Glsi04g0007 744 ProSiteProfiles Ankyrin repeat region circular profile. 375 407 - -
Glsi04g0007 744 SMART serkin_6 463 726 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0007 744 ProSiteProfiles Protein kinase domain profile. 459 726 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0007 744 Gene3D Phosphorylase Kinase; domain 1 457 538 - -
Glsi04g0007 744 Pfam Ankyrin repeats (3 copies) 349 435 IPR002110 GO:0005515
Glsi04g0007 744 CDD STKc_MAP3K-like 469 722 - -
Glsi04g0007 744 SUPERFAMILY Protein kinase-like (PK-like) 473 722 IPR011009 -
Glsi04g0007 744 FunFam serine/threonine-protein kinase STY46-like 456 539 - -
Glsi04g0007 744 ProSiteProfiles Ankyrin repeat profile. 375 407 IPR002110 GO:0005515
Glsi04g0007 744 Gene3D - 316 454 IPR036770 -
Glsi04g0007 744 FunFam Os01g0748600 protein 449 741 - -
Glsi04g0007 744 Gene3D Transferase(Phosphotransferase) domain 1 539 738 - -
Glsi04g0007 744 FunFam Integrin-linked protein kinase 1 317 454 - -
Glsi04g0007 744 SMART ANK_2a 343 371 IPR002110 GO:0005515
Glsi04g0007 744 SMART ANK_2a 375 404 IPR002110 GO:0005515
Glsi04g0007 744 SMART ANK_2a 408 437 IPR002110 GO:0005515
Glsi04g0007 744 SUPERFAMILY Ankyrin repeat 344 445 IPR036770 -
Glsi04g0007 744 ProSitePatterns Serine/Threonine protein kinases active-site signature. 580 592 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0007 Glsi-ChrGlsi04 152035 163527 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0007 271 743 MAP Kinase Kinase Kinase AT2G43850 80.962 0.0 830
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Glsi04g0007 PK_Tyr_Ser-Thr 3.1e-51 CL0016