Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0003 ATGCCCACAACTTCCGACATTTTCTGCCTCCTCTCACTTTTCTCCTCCCTCACACCCATCCTCTCTTCTTCCACCACTCAAAAGCACCACCGCCGTATCCTCCACCAACCATTTTTCCCCAAGGACTCCTTTCCGCCAACCCTACCCCCAGACCCTTCTCCGCAATCCCAACCCAAACAGCCTTTTTCTTCATCTTCCTCCTCTCCTACGCAGAAGGCTTTTTTCCCTTCTTACCATTCCCCACCACCCCCTCCTTCTCCGACTGCTATCGCCACGTTCCCAGCCAACATCTCGTCCCTACCCTTCCCCCAACCCTCTTCCCCGAATCGCCACCCCATCATCGCAATCGCTGTCTCTGTCTCTCTGTTCTCGGCAGCTCTTGTGGCCGTTTTGACTGCTTTCATTTACTACCGTCGACACCGTATATGCACCACTGCTGACAAGGCTTCAAGATCGGACAGTCTCCGATTATACCCACCAAACACTCTGACTTCCGATGGTAGTCGTAAGCCTCGCAGCACATCGAGCGCGAGCTCAGAGTTTCTCTATCTCGGTACTGTGGTAAATTCACGGGAAGCTGGTGGCAAAACTGTCATAAATTCCAGCAATGCTGGTGTGACTATGGGCTCTTCTGCCCCACCATACCGAAAGTTGGGATCCCCCGAACTCAAACCGCTTCCTCCATTGCCACGACACAATTTCAGGCAGAGTAACAGAAATACAGCGAATGGGGAAGATGATGAAGAGGAGGAATTCTTCTCTCCAAGAGGGTCTTCAGGCGGCAGACAGAGTCCTCGGCATACTGGGCCAAGCTCCGGGAGAGTCTTTCAGTTGGAAGTGGATAAACTTGGGAGTGGAAGCTTCAATTCAAGAACTCCTTCTTACCCTTGTTCAAATTCTGTATCTAGCACTACTTCCCCTTCTATGAATTTGAGTCCCAGGCACTCACCGGACTCAGCCTCATCGCTACCATTGCCTCAGCGCCCGATGACATCCTCTTCACCGTCTTCACCAAGTCCAAGGAGTGTCCAGAATCCTCCAGAAATAAATTGGAATATTTTGGTTTCAGGGCAGGGAAAGAATCCTGGGGCGACTATAGAGGTAAGTGTTCCAATCAAAATGCCCCCGTCTCCTCCGCCGCTTCCGCCGCCACGATTTTGGGAGATTCCTGTCCCAGTTAGAGAAGGATCTGCGGAAAAGAATGCGGAGACTCGAAAGGCAAAATTGAAACCTTTACACTGGGATAAAGTTAGGGCCAGCTCTGATCGGGCCATGGTTTGGGATCAGCTAAAACCAAGTTCTTTCCAATTGAACGAGGAAATGATTGAGACGCTCTTTATGGTGAATAATAACTCAAATTTCACCCTTAGAGACAATGCCCGGCGTCAAATGAAACTGGTTGTTCTTGCCCCCATATTAAACTCCTCTTGTACTCTAGGAAATTGGGATATGTTGGGAACAGAACTTCTAGAAAGTTTGTTAAAGATGGCTCCAACCAAAGATGAAGAACGTAAGCTGAAGGAGTTCAAAGATGAATCACCCTTCAAGCTAGGCCCTGCTGAGAAATTTCTTAAAGTCATGCTCGATATTCCTTTTGCATTTATGAGAGTGGACGCTATGCTTTACATTGCCAATTTTGATTCAGAATTAGAATACCTTAGGAAATCTTTTGAAACTCTGGAGGTGGCTTGTGAGGAATTGAGGAATAGTAGAATGTTTTTGAAGCTCCTTGAAGCAGTGCTCAAAACTGGCAACCGTATGAATGTTGGCACCAATCGTGGTGATGCACATGCATTCAAGCTGGATACACTTCTAAGGCTAGTTGATATTAAAGGGACCGACGGAAAGACTACTCTCTTGCATTTTGTAGTTCAGGAAATTGTCAGAACTGAAGGTTCTCACATTTCTGGTGCTCATCATCATCAAACTGCTGAGAAAATCCAGCAGTCCACGCTACAGGATGAAGTTGAATTTAGGAAGCTTGGACTCCAAGTTGTTTCAGGCTTGTGTGGGGAGCTCTCCAATGTAAAAAAAGCAGCTGCAATGGACTCTGATATGCTTAGTAGCGATATTGCTAAACTTGCCAGAGGGATTGCAAAAGTTGTAGAAGTTGTAAAATTGAATGAAGAGTCACCTTTGAGAGAAACTAGCCGAAAATTTTCAGAGGCAATGAAAGGTTTCTTGAAGAAGGGAGAGGAAGAAATTATATCAATTCAGACCCAAGAGAAGGATGCGTTCTCTTTAGTAAAGGAGCTAACTGAGTATTTCCATGGAAATTCTTCCAAGGAAGAAGCTCATCCGTTTAGGATTTTTATGGTTGTGAGGGATTTCCTGTCAATACTTGATCGGGTGTGCAAGGATGTTGGGAAGGTAAATGAGAGAACTTTAGTTGGTTTCTGTCAATATTCAATGCCTTCAAATCCCATCCTGCCTGCAATATTCCCTGATATTATTGGCAGGAAACAGCCATCTGGTTCCTCAGATGATGAAAGTTCCTCTCGCTCATCATAG 2511 0.4624 MPTTSDIFCLLSLFSSLTPILSSSTTQKHHRRILHQPFFPKDSFPPTLPPDPSPQSQPKQPFSSSSSSPTQKAFFPSYHSPPPPPSPTAIATFPANISSLPFPQPSSPNRHPIIAIAVSVSLFSAALVAVLTAFIYYRRHRICTTADKASRSDSLRLYPPNTLTSDGSRKPRSTSSASSEFLYLGTVVNSREAGGKTVINSSNAGVTMGSSAPPYRKLGSPELKPLPPLPRHNFRQSNRNTANGEDDEEEEFFSPRGSSGGRQSPRHTGPSSGRVFQLEVDKLGSGSFNSRTPSYPCSNSVSSTTSPSMNLSPRHSPDSASSLPLPQRPMTSSSPSSPSPRSVQNPPEINWNILVSGQGKNPGATIEVSVPIKMPPSPPPLPPPRFWEIPVPVREGSAEKNAETRKAKLKPLHWDKVRASSDRAMVWDQLKPSSFQLNEEMIETLFMVNNNSNFTLRDNARRQMKLVVLAPILNSSCTLGNWDMLGTELLESLLKMAPTKDEERKLKEFKDESPFKLGPAEKFLKVMLDIPFAFMRVDAMLYIANFDSELEYLRKSFETLEVACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLRLVDIKGTDGKTTLLHFVVQEIVRTEGSHISGAHHHQTAEKIQQSTLQDEVEFRKLGLQVVSGLCGELSNVKKAAAMDSDMLSSDIAKLARGIAKVVEVVKLNEESPLRETSRKFSEAMKGFLKKGEEEIISIQTQEKDAFSLVKELTEYFHGNSSKEEAHPFRIFMVVRDFLSILDRVCKDVGKVNERTLVGFCQYSMPSNPILPAIFPDIIGRKQPSGSSDDESSSRSS 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0003 836 PANTHER FORMIN-RELATED 15 821 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Glsi04g0003 836 MobiDBLite consensus disorder prediction 58 75 - -
Glsi04g0003 836 MobiDBLite consensus disorder prediction 283 347 - -
Glsi04g0003 836 ProSiteProfiles Formin homology-2 (FH2) domain profile. 399 807 IPR015425 -
Glsi04g0003 836 MobiDBLite consensus disorder prediction 148 176 - -
Glsi04g0003 836 MobiDBLite consensus disorder prediction 257 271 - -
Glsi04g0003 836 MobiDBLite consensus disorder prediction 197 347 - -
Glsi04g0003 836 Gene3D Formin, FH2 domain 405 796 IPR042201 -
Glsi04g0003 836 SUPERFAMILY Formin homology 2 domain (FH2 domain) 375 794 - -
Glsi04g0003 836 SMART it6_source 399 796 IPR015425 -
Glsi04g0003 836 Pfam Formin Homology 2 Domain 481 781 IPR015425 -
Glsi04g0003 836 Pfam Formin Homology 2 Domain 400 457 IPR015425 -
Glsi04g0003 836 MobiDBLite consensus disorder prediction 44 90 - -
Glsi04g0003 836 MobiDBLite consensus disorder prediction 76 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0003 Glsi-ChrGlsi04 74537 79433 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0003 22 833 FH2 protein (formin) Gene Family AT2G43800 45.377 0.0 585