Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0001 ATGAAGGAAGAAATGGAAGGAGGAGAAGCAGCAGCAGCTCAGCCAGCTGACACCGTCATGTCGGAGGTGCCGCCGGTTGCGCAGTCTGACTCCCAACAACAGCACCCTGCGAGTATGGGAACCGAGAATATCCCCGCTACGCTTAGCCATGGCGGCAGATTTATTCAATACAATATCTTCGGTAATATATTCGAAGTCACCGCCAAGTACAAGCCCCCCATCATGCCCATCGGTAAAGGCGCTTACGGTATCGTCTGTTCGGCTCTGAATTTCGAGACGAATGAGCATGTGGCCATAAAGAAGATTGCAAATGCATTTGACAATAAAATTGATGCCAAGAGGACCCTCCGCGAAATTAAGCTGCTTCGACATATGGATCACGAAAACGTTGTTGCAATCAGGGATATAATACCACCACCTCAAAGGGAGGCATTTAATGATGTTTACATAGCATATGAGCTAATGGACACTGACCTTCACCAAATCATTCGTTCAAATCAAGCATTGTCTGAGGAGCACTGTCAGTATTTCCTGTATCAAATCCTCCGCGGGTTGAAGTACATACATTCTGCAAATGTTCTGCATAGGGACTTAAAGCCCAGCAATCTTCTCCTGAATGCCAACTGTGACTTGAAAATTTGTGATTTTGGACTGGCTCGTGTTACCTCTGAAACTGACTTTATGACTGAGTATGTTGTTACAAGATGGTACCGAGCACCAGAGCTTCTGTTAAACTCTTCTGATTATACGGCAGCTATTGATGTATGGTCTGTAGGTTGTATTTTCATGGAATTGATGGATCGAAAACCATTATTTCCTGGCAGAGATCATGTGCAACAGTTACGTCTACTTATGGAGCTGATTGGCACCCCATCAGAAGCTGACTTGGGGTTTCTGAATGAAAGTGCTAAGAGATACATTAGGCAACTACCTCTTTATCATCGACAGTCTTTCCAAGAAAAGTTTCCACTTGTCCATCCAGCAGCTATAGATCTTGTTGAAAAAATGTTAACTTTTGATCCCAGACAAAGGATTACTGTTGAAGATGCACTTGCACATCCCTATTTAACATCTCTACATGACATCAGTGATGAACCTGTGTGCATGACTCCCTTCAGCTTTGACTTTGAACAACATGCTTTGACGGAGGAACAGATGAAAGAACTGATATACCGAGAGGCTCTTGCATTTAACCCTGAATATCAGCGTCAGTGA 1215 0.4387 MKEEMEGGEAAAAQPADTVMSEVPPVAQSDSQQQHPASMGTENIPATLSHGGRFIQYNIFGNIFEVTAKYKPPIMPIGKGAYGIVCSALNFETNEHVAIKKIANAFDNKIDAKRTLREIKLLRHMDHENVVAIRDIIPPPQREAFNDVYIAYELMDTDLHQIIRSNQALSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARVTSETDFMTEYVVTRWYRAPELLLNSSDYTAAIDVWSVGCIFMELMDRKPLFPGRDHVQQLRLLMELIGTPSEADLGFLNESAKRYIRQLPLYHRQSFQEKFPLVHPAAIDLVEKMLTFDPRQRITVEDALAHPYLTSLHDISDEPVCMTPFSFDFEQHALTEEQMKELIYREALAFNPEYQRQ 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0001 404 SUPERFAMILY Protein kinase-like (PK-like) 76 364 IPR011009 -
Glsi04g0001 404 SMART serkin_6 71 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0001 404 ProSitePatterns Protein kinases ATP-binding region signature. 77 101 IPR017441 GO:0005524
Glsi04g0001 404 CDD STKc_TEY_MAPK 64 399 - -
Glsi04g0001 404 FunFam Mitogen-activated protein kinase 56 165 - -
Glsi04g0001 404 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 69 357 - -
Glsi04g0001 404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Glsi04g0001 404 Gene3D Transferase(Phosphotransferase) domain 1 155 383 - -
Glsi04g0001 404 ProSiteProfiles Protein kinase domain profile. 71 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0001 404 ProSitePatterns MAP kinase signature. 106 209 IPR003527 GO:0004707|GO:0005524|GO:0006468
Glsi04g0001 404 FunFam Mitogen-activated protein kinase 155 383 - -
Glsi04g0001 404 Pfam Protein kinase domain 76 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0001 404 MobiDBLite consensus disorder prediction 1 45 - -
Glsi04g0001 404 Gene3D Phosphorylase Kinase; domain 1 54 393 - -
Glsi04g0001 404 MobiDBLite consensus disorder prediction 24 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0001 Glsi-ChrGlsi04 23427 30364 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0001 5 403 MAP Kinase Gene Family AT2G43790 86.070 0.0 691
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Glsi04g0001 Pkinase 3.7e-73 CL0016