Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g2225 ATGGACTATAGAAAAGTTGAAGTTAAGAGTGATTCTTTGTCTTTAGTGGCATTCACAAGGAATAGTAAGGATGTTGCAGAGGATGCCCATGGATTTAAATTTCTATGTAAATGGATTAACAAAGATTCAGAGTTGACTTTCTCTCATGCCTCAAGGAAAGGAAATAGATGTGCTGCCTGGTTATTTAGATATAGAGCAAATGTGATGCCAAATCTGCACACCTTTAACACTACTCCTTCAAAGCTTGAGGATCTTTTCAACTTGATGCTAATGGGGCTACCATACTCTGTTTTGTCTTTCAGCAGTTTTTGGTTAGGTGCTTTGCCTTGTTTCTTTGTGCAAGGAAAAAAAAAGGGGGTTTCTCCTTTTGCTCGAAGTTCACCTATGAGTTCCGGATTTAGCACAATTTTGAATCTGGTATGGCTTGCATCAACACTGATTCTTATACATGGAGCACAAAAGGAAGTCTCTTTGAGACCTGACGTTGTGAAAATAGGTGCTATTTTCACTTTTAAAACTATAAACGGACGAGTTTCCAAAATTGCCATCAAAGCTGCTGAGAAGGATGTGAATTCCGATCCTCGCATCCTTGGTGGATGTAAATTGTCCATAAGCATGCACGATTCCAACTTCAGCGGTTTTCTTGGCCTCGTTGGGGCGCTGAAGTTCTTGGAGACGGACTCGGTAGCTATTATTGGTCCACAAAATTCAGTAATGGCACATGTACTCTCGCATCTTACAAATGAACTCCATGTTCCTCTATTGTCCTTCACAGCCCTAGATCCCACCCTATCACCTCTGCAGTACCCTTATTTTGTCCAAACAGCTCCCAATGATCAATTCCAGCTGACTGCAGTTGCGGACATTATTAGCTATTATGGTTGGAGAGAGATTATTGTTGTTTTCAGTGATGAGGATCAGAGTCGAAATGGTATAACTGTATTAGGGGATAAACTTGCCGAAAGACGGTGTAAAATATCTTACAAAGCAATACTGCCCCCTGATCCAACAGCTAGTCCAAGGGATGCTACTGCTGAGTTGACCAAGGTTCAAAGTATGGAAGCGCGAGTAATTGTTGTACACACCTACTCCCAAACAGGTCTCTTGGTATTTGATGTGGCTCAGAAACTAGGGATGATGGGGAAAGGGTATGTCTGGATAGCTACTGCTTGGTTATCAAATGTTTTAGACTCAACTTCACCACTTCCTTTGCATACTAGTCACTCAATCCAAGGAGTTCTTACACTTCGCCCTCACATCCCTCAATCAAAAAGAAAACAGGCCTTTATGTCAAGGTGGAACCAGATAAGTAATGGTTCAATTAGATTGAATCCATATGGACTCTATGCTTATGATTCTGTTTGGACCATTGCTCTTGCATTGAAATTATTTTTTGATCAGAAAGGTACCATTTCATTCTCTAATAATACAAATTTAAGCGGTATGAGAGGAGAGACTCTGGATCTAGGGGCATTGAGCATTTTTGATGGTGGTAAACAGTTACTTGATAACATATTGCGCACTAATATGACTGGATTGACAGGACCTATTCAATTTGGTTCAGATAGATCACCGTTACATCCATCATATGACATCCTTAATGTAATTACTGCTGGTTATAGGAAGATTGGCTACTGGTCTAATTATTCTGGCCTATCTGTTGTTGCTCCTGAAAAACTTTATAGAAAGGCTGCCAACCTTTCAATTTCAAATCAGCATTTATACCATATGATATGGCCTGGGGGTACAACAGAGAAGCCTCGTGGATGGGTTTTCCCAAATAATGGAAAGCAGCTAAGAATTGGAGTTCCCAACCGAGTTAGTTATCGCAACATTGTCTCACAAATAAATGATACCACTACAGTTCAAGGATACTGCATAGATGTATTCCTCGCGGCCATAAAATTGCTACCATATGCAGTTCCATATAGGTTTGTTCTGTTTGGAGATGGACATAAGAACCCAAGCTACTATGACCTTGTCAATATGATCACTTCTGATGTCTTTGATGCTGCTGTAGGTGACATTGCAATTGTCACTGACCGAACAAAGATTGTGGATTTTACTCAACCATATATAGAGTCAGGGCTAGTTGTGGTTACCCCAGTAAAAACATTCAAGTCAAATGCTTGGGTTTTCTTGCGACCATTTACCCCATTAATGTGGGGTGTCACAGCTGTTTTTTTTCTCATTGTTGGAGCAGTTGTGTGGATTCTTGAACATAGAACAAATGATGAGTTCCGGGGGCCTCCTAAGAAACAAATTGTTACAATTCTTTGGTTTAGCCTCTCCACCATGTTTTTTGCTCACAGAGAAAACACTGTGAGTGCACTTGGTCGCACTGTACTTATCATTTGGCTTTTTGTGGTTCTGGTAATCAATTCAAGCTACACCGCAAGCCTAACATCAATTCTCACGGTGCAACAACTGTCCTCACCCATTACAGGAATTGACACCTTGATTACCAGTAATGAACCTATAGGATTTCAAGTAGGGTCATTTGCTGAAAACTATCTTATTGAGGAACTCAACATCCCAAAATATAGACTTATTCCTCTTGGCTCACCAGAAGAATATGCTATTGCTCTTGAGAGGGGCACTGTTGCTGCTGTGGTAGATGAACGACCATATGTAGAACTCTTCATGTCGGATCACTGCAAATTCTCCGTCAGAGGCCAAGAGTTCACCAAGAGTGGATGGGGCTTTGCATTTCCAAGGGACTCCCCTTTATCCATTGATATGTCAACTGCCATTCTGACTCTATCTGAGAATGGTGAACTCCCGAAGATTCATGAAAGGTGGCTCTCAAAAAAGGCTTGCGAATTCCATAGTACTGAAGATGAATCTGAGCAACTTCGCTTAGAAAGCTTTTGGGGCCTGTTTCTGATATGTGGGGTAGCAAGTTTCCTAGCCCTTCTTGTCTACTTCTGCTTGATGGTTCTCCAATTCAGCCGGCACGTCCCTAAAAATGATGATCCTTCTAATTGTGGCCGTCTGCCCTCTGCACGTATCCAGACGTTTCTAAATTTTGTTGATGAAAAAGAAGTCGCCTCACAGAGAAAGTTTAAAAGAAAACGTAACGATATTTCATAA 3093 0.4106 MDYRKVEVKSDSLSLVAFTRNSKDVAEDAHGFKFLCKWINKDSELTFSHASRKGNRCAAWLFRYRANVMPNLHTFNTTPSKLEDLFNLMLMGLPYSVLSFSSFWLGALPCFFVQGKKKGVSPFARSSPMSSGFSTILNLVWLASTLILIHGAQKEVSLRPDVVKIGAIFTFKTINGRVSKIAIKAAEKDVNSDPRILGGCKLSISMHDSNFSGFLGLVGALKFLETDSVAIIGPQNSVMAHVLSHLTNELHVPLLSFTALDPTLSPLQYPYFVQTAPNDQFQLTAVADIISYYGWREIIVVFSDEDQSRNGITVLGDKLAERRCKISYKAILPPDPTASPRDATAELTKVQSMEARVIVVHTYSQTGLLVFDVAQKLGMMGKGYVWIATAWLSNVLDSTSPLPLHTSHSIQGVLTLRPHIPQSKRKQAFMSRWNQISNGSIRLNPYGLYAYDSVWTIALALKLFFDQKGTISFSNNTNLSGMRGETLDLGALSIFDGGKQLLDNILRTNMTGLTGPIQFGSDRSPLHPSYDILNVITAGYRKIGYWSNYSGLSVVAPEKLYRKAANLSISNQHLYHMIWPGGTTEKPRGWVFPNNGKQLRIGVPNRVSYRNIVSQINDTTTVQGYCIDVFLAAIKLLPYAVPYRFVLFGDGHKNPSYYDLVNMITSDVFDAAVGDIAIVTDRTKIVDFTQPYIESGLVVVTPVKTFKSNAWVFLRPFTPLMWGVTAVFFLIVGAVVWILEHRTNDEFRGPPKKQIVTILWFSLSTMFFAHRENTVSALGRTVLIIWLFVVLVINSSYTASLTSILTVQQLSSPITGIDTLITSNEPIGFQVGSFAENYLIEELNIPKYRLIPLGSPEEYAIALERGTVAAVVDERPYVELFMSDHCKFSVRGQEFTKSGWGFAFPRDSPLSIDMSTAILTLSENGELPKIHERWLSKKACEFHSTEDESEQLRLESFWGLFLICGVASFLALLVYFCLMVLQFSRHVPKNDDPSNCGRLPSARIQTFLNFVDEKEVASQRKFKRKRNDIS 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g2225 1030 Gene3D - 711 836 - -
Glsi03g2225 1030 SUPERFAMILY Periplasmic binding protein-like II 575 937 - -
Glsi03g2225 1030 CDD PBP1_GABAb_receptor_plant 164 556 IPR044440 -
Glsi03g2225 1030 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 163 995 IPR015683 -
Glsi03g2225 1030 SUPERFAMILY Periplasmic binding protein-like I 159 591 IPR028082 -
Glsi03g2225 1030 Gene3D - 594 710 - -
Glsi03g2225 1030 CDD GluR_Plant 597 935 - -
Glsi03g2225 1030 PIRSF IGluLR_plant 131 1028 IPR017103 -
Glsi03g2225 1030 FunFam Glutamate receptor 594 710 - -
Glsi03g2225 1030 Gene3D - 862 942 - -
Glsi03g2225 1030 FunFam Glutamate receptor 278 438 - -
Glsi03g2225 1030 SMART GluR_14 600 937 IPR001320 GO:0015276|GO:0016020
Glsi03g2225 1030 FunFam Glutamate receptor 710 840 - -
Glsi03g2225 1030 Pfam Receptor family ligand binding region 181 535 IPR001828 -
Glsi03g2225 1030 Pfam Bacterial extracellular solute-binding proteins, family 3 621 936 IPR001638 -
Glsi03g2225 1030 Gene3D - 278 552 - -
Glsi03g2225 1030 Gene3D - 181 527 - -
Glsi03g2225 1030 Pfam Ligand-gated ion channel 937 967 IPR001320 GO:0015276|GO:0016020
Glsi03g2225 1030 FunFam Glutamate receptor 836 939 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g2225 Glsi-ChrGlsi03 82631260 82643552 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g2225 157 1028 Ion Channels AT2G17260 62.217 0.0 1130