Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g2222 ATGGGGATTTGCTGGGGTTCTTCAGCTGACAACCCAAGCACAAGCACAAACACAACCGATAACCTTAGTGCAGCTACAACGGGGACATCCCGGACCACCAGCAATACTACAACATCTTCTGGAAGTGGTAACAGCTCTACAAATAGCCAGTTCTCGGTGGCTAGTGGCGATGCAGCTTATCTAAATGGGCAGATCTTACCTACCCCAAATTTGAGGATCTTCACTTTTGCGGAATTGAAGGCCGCAACTAAGAATTTTAAAGCTGATACAGTACTTGGGGAGGGGGGGTTTGGAAAAGTCTTCAAGGGTTGGCTCGAAGAAAAGGCTTCGCCAAAGAATGGAAGTGGAACAGTGATTGCCGTTAAAAAATTGAACTCAGAGAGCGTACAAGGATTTGCGGAGTGGCAGTCAGAAGTAAATTTTCTAGGACGCCTTTCTCATCCTAACCTTGTTAAGCTGTTGGGATACTGTTTGGAGGAAACAGAGCTTCTTCTTGTCTATGAATTCATGCAAAGGGGCAGTTTGGAGAATCATCTATTCGGAAGGGGCTCTGCTGTTCAACCACTTCTTTGGGACATCAGGCTTAAGATTGCAATTGGAGCAGCTCGTGGCTTGGCATTCTTGCACACATCCGAGAAAGTAATTTACCGAGATTTCAAGGCCTCCAATATATTGCTGGATGGGTCCTATACTGCCAAGATTTCGGACTTCGGGTTGGCAAAATTGGCCCCTTCAGCAAGTCAATCCCATGTGACAACGAGGGTGATGGGCACATATGGTTATGCGGCTCCTGAGTATGTGGCGACGGGGCATCTGTATGTAAAGAGTGATGTATATGGGTTTGGAGTTGTTTTGGTTGAGATGCTAACAGCCCAACGGGCACTTGATACCAACCGTCCAAGCGGGCAACATAGTCTAGTGGACTGGGTGAAACCGTACCTACACGATAGAAGAAAATTGAAGAGCATTATGGATTCTCGTTTAGAGGGGAAATATCCATCCAAAGCTGCATTTCGTATAGCTCAGCTTGCTTTAAAATGTCTTGCAGCTGAGCCCAAACAGCGCCCATCAATGAAGCAAGTTTTGGACAACTTGGAGCGGATTCAAGCTGCCAATATCAAACCTCTGGAGCCTAGATTGCTTTCCACTCATACCGATGCTCCCCATCAAGCTCACCAACCTCTGCACCGTCCTTCTCACTGA 1203 0.4688 MGICWGSSADNPSTSTNTTDNLSAATTGTSRTTSNTTTSSGSGNSSTNSQFSVASGDAAYLNGQILPTPNLRIFTFAELKAATKNFKADTVLGEGGFGKVFKGWLEEKASPKNGSGTVIAVKKLNSESVQGFAEWQSEVNFLGRLSHPNLVKLLGYCLEETELLLVYEFMQRGSLENHLFGRGSAVQPLLWDIRLKIAIGAARGLAFLHTSEKVIYRDFKASNILLDGSYTAKISDFGLAKLAPSASQSHVTTRVMGTYGYAAPEYVATGHLYVKSDVYGFGVVLVEMLTAQRALDTNRPSGQHSLVDWVKPYLHDRRKLKSIMDSRLEGKYPSKAAFRIAQLALKCLAAEPKQRPSMKQVLDNLERIQAANIKPLEPRLLSTHTDAPHQAHQPLHRPSH 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g2222 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Glsi03g2222 400 MobiDBLite consensus disorder prediction 1 48 - -
Glsi03g2222 400 ProSitePatterns Protein kinases ATP-binding region signature. 92 123 IPR017441 GO:0005524
Glsi03g2222 400 CDD STKc_IRAK 92 368 - -
Glsi03g2222 400 ProSiteProfiles Protein kinase domain profile. 86 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g2222 400 FunFam Serine/threonine-protein kinase BIK1 53 169 - -
Glsi03g2222 400 PANTHER OS01G0588500 PROTEIN-RELATED 35 369 - -
Glsi03g2222 400 MobiDBLite consensus disorder prediction 7 48 - -
Glsi03g2222 400 Pfam Protein tyrosine and serine/threonine kinase 88 365 IPR001245 GO:0004672|GO:0006468
Glsi03g2222 400 SUPERFAMILY Protein kinase-like (PK-like) 63 365 IPR011009 -
Glsi03g2222 400 FunFam Serine/threonine-protein kinase PBS1 170 382 - -
Glsi03g2222 400 Gene3D Phosphorylase Kinase; domain 1 70 169 - -
Glsi03g2222 400 Gene3D Transferase(Phosphotransferase) domain 1 170 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g2222 Glsi-ChrGlsi03 82607625 82610353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g2222 57 369 Receptor kinase-like Gene Family AT4G02010 50.000 3.44e-102 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Glsi03g2222 PK_Tyr_Ser-Thr 7.5e-49 CL0016