Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g2220 ATGGCAAACTCCGATTCCGATTATCCTTCGAGTAGCGCTCAGAAGCAGCATTCTCGAAGGAAGCGCAATACCAAATGGATCACAATCACGGACGATCAGCCTGGGAAGAAACCCGACCCAGGTGCACCGAAGATTACCCGCGCATGTACCGAGTGTGGGAAGAAGTTCTGGTCTTGGAAAGCTCTGTTTGGTCACATGCGGTGCCATCCTGAACGTGAATGGCGGGGGATTAATCCACCCCCGAATTTCCGTCGACAGAATGATGAACAAGTATTGATGAGCGAGGAGGACCAAGAGGTGGCCGCATCTCTGCTGTTGCTTGCCAATGGAACCACAACCACCAGTCATGATCAGGAATCCGAAACTCGCTTCGAGTGCTTCAGTTGCAACAAGGTATTTGGATCCCATCAGGCTCTGGGCGGGCATAGAGCTAGTCACAAGAATGTCAAGGGTTGTTTTGCCACAACCAGGAGCGATTGGGAGCGTAATGTCCTTGTTGAGGACCACATTCATAACTGTGGCAGTGGCAGCCACGAGTGCAGCATATGCCTCAGGGTGTTGTCCAGTGGTCAAGCACTGGTTGGCCACAAGAGGTGTCTCTGGGACAAAGGGGAGAATGAGCCATCCATCACTCAAGCATGTGGTCTCGATTTAAATTTGCCTGCCCCTCTTGAACATCCATACTCTTCCAATTCACCCCTCACTCTGGATTTGAGGTTGGGACTTTAA 729 0.513 MANSDSDYPSSSAQKQHSRRKRNTKWITITDDQPGKKPDPGAPKITRACTECGKKFWSWKALFGHMRCHPEREWRGINPPPNFRRQNDEQVLMSEEDQEVAASLLLLANGTTTTSHDQESETRFECFSCNKVFGSHQALGGHRASHKNVKGCFATTRSDWERNVLVEDHIHNCGSGSHECSICLRVLSSGQALVGHKRCLWDKGENEPSITQACGLDLNLPAPLEHPYSSNSPLTLDLRLGL 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g2220 242 ProSitePatterns Zinc finger C2H2 type domain signature. 49 69 IPR013087 -
Glsi03g2220 242 ProSiteProfiles Zinc finger C2H2 type domain profile. 47 74 IPR013087 -
Glsi03g2220 242 Gene3D Classic Zinc Finger 48 146 - -
Glsi03g2220 242 Pfam C2H2-type zinc finger 48 71 - -
Glsi03g2220 242 Pfam C2H2-type zinc finger 123 147 - -
Glsi03g2220 242 Pfam C2H2-type zinc finger 178 199 - -
Glsi03g2220 242 ProSitePatterns Zinc finger C2H2 type domain signature. 126 146 IPR013087 -
Glsi03g2220 242 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 20 242 - -
Glsi03g2220 242 ProSiteProfiles Zinc finger C2H2 type domain profile. 124 151 IPR013087 -
Glsi03g2220 242 SMART c2h2final6 178 198 IPR013087 -
Glsi03g2220 242 SMART c2h2final6 124 146 IPR013087 -
Glsi03g2220 242 SMART c2h2final6 47 69 IPR013087 -
Glsi03g2220 242 MobiDBLite consensus disorder prediction 1 44 - -
Glsi03g2220 242 SUPERFAMILY beta-beta-alpha zinc fingers 48 146 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g2220 Glsi-ChrGlsi03 82599515 82600243 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g2220 12 242 C2H2 Transcription Factor Family AT4G35280 53.282 9.49e-79 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi03g2220 zf-C2H2_6 7e-08 CL0361