Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g2208 ATGGGTTGCTGCCAATCATCATTTCCCACTGAAACTCACCCAGAAAAGGAGCAAAATCAACAACCCCACCACACCCACACCCACACTCGTAACCACATCCATACCCAACCACACGCACCTTCTCCAGCTGCTGACCCATCAACCGCCGCCGGAGTCCCATCTTTCTCCGAGTTCTCCTTCTCTGACCTCAAAGCTGCCACCGAAAATTTCAGCTCAGACTTTATTGTCTCCGAGAGTGGGGAGAAGGCTCCGAACGTTGTTTATAAGGGCCGCCTCCACAACCGCCGCTGGATTGCCGTCAAGAAGTTCACCAAGGCTGCATGGCCTGATCCCAAGCAATTTGTGGAAGAGGCGTCGGGTGTTGGAAAATTGCGACATCGCAGGCTTGCTAATTTGATCGGCTACTGCTGTGATGGAGATGAGAGGCTACTTGTTGCAGAGTACATGCCCAATGACACTCTCGCAAAGCATCTTTTCCACTGGGAAAATCAGACCATTGAGTGGGCCATGCGCTTAAGAGTGGCTCTTTCGATTGCAGAAACTTTAAATTACTGTAGTTCTGAGGGCCGCCCTTTATATCATGATTTGAATGCTTATAGGGTTCTTTTTGATGAGGAAGGTGATCCACGTTTGTCATGTTTTGGTTTAATGAAGAACAGTAGGGATGGAAAAAGTTATAGCACGAATCTTGCTTACACACCTCCTGAATATCTAAGAAATGGTAGGGTCACCCCTGAAAGTGTCATTTACAGCTTTGGTACAGTTCTCCTAGACCTGCTAAGTGGGAAACACATCCCTCCAAGTCAAGCACTTGACATGATACAGGGAAAAAACAACATGCTCTTAATGGATTCACATTTGGAGGGAAAGTTCTCAACAGAAGAGGCAACAGTAGTTGTTAATCTTGCCTCTAAATGTTTGCAATATGAACCCAGGGAGCGGCCTGATACAAAGGATTTAGTCACAACTCTTGCTCCATTGCAAACAAGACCTGATGTTCCTTCTTACATTATGCTTGGAATTCCAAAGCATGAGGAAGCTCCATCAACCCCACAACGCCCTCTTTCAGCAATGGGTGAGGCTTGTTCGAGGATGGACCTCACTGCAATACATCAGATCTTGGTTGCAACGCACTACAGAGATGATGAAGGAACTAATGAGTTGTCTTTCCAAGAGTGGACACAACAGATGAGAGATATGTTGGAAGCAAGGAAACGTGGAGACTATGCATTCCGTGACAAAGATTTTAAGACAGCCATTGATAATTATTCCCAGTTTATCGGTGTGGAAACGATGGTGTCCCCAACAGTGTTTGCACGGCGCAGTCTATGCTATCTGTTATGTGATCAACCAGATCCTGCCCTTAGAGATGCAATGCAAGCACAGTGTGTTTATCCAGACTGGCCCACAGCTTTCTACATGCAATCCGTTGCTCTTGCAAAGCTGGGCATGCACAAGGATGCCGCTGATATGTTAAATGAGGCGACTGCTTTGGAAGAAAAAAGGCAACGAGGAGGTAGACCATCATAG 1530 0.4654 MGCCQSSFPTETHPEKEQNQQPHHTHTHTRNHIHTQPHAPSPAADPSTAAGVPSFSEFSFSDLKAATENFSSDFIVSESGEKAPNVVYKGRLHNRRWIAVKKFTKAAWPDPKQFVEEASGVGKLRHRRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQTIEWAMRLRVALSIAETLNYCSSEGRPLYHDLNAYRVLFDEEGDPRLSCFGLMKNSRDGKSYSTNLAYTPPEYLRNGRVTPESVIYSFGTVLLDLLSGKHIPPSQALDMIQGKNNMLLMDSHLEGKFSTEEATVVVNLASKCLQYEPRERPDTKDLVTTLAPLQTRPDVPSYIMLGIPKHEEAPSTPQRPLSAMGEACSRMDLTAIHQILVATHYRDDEGTNELSFQEWTQQMRDMLEARKRGDYAFRDKDFKTAIDNYSQFIGVETMVSPTVFARRSLCYLLCDQPDPALRDAMQAQCVYPDWPTAFYMQSVALAKLGMHKDAADMLNEATALEEKRQRGGRPS 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g2208 509 SUPERFAMILY Protein kinase-like (PK-like) 53 335 IPR011009 -
Glsi03g2208 509 MobiDBLite consensus disorder prediction 1 15 - -
Glsi03g2208 509 FunFam probable serine/threonine-protein kinase At5g41260 150 341 - -
Glsi03g2208 509 Pfam Protein tyrosine and serine/threonine kinase 86 324 IPR001245 GO:0004672|GO:0006468
Glsi03g2208 509 Gene3D Tetratricopeptide repeat domain 398 505 IPR011990 GO:0005515
Glsi03g2208 509 FunFam probable serine/threonine-protein kinase At4g35230 398 507 - -
Glsi03g2208 509 FunFam probable serine/threonine-protein kinase At4g35230 45 148 - -
Glsi03g2208 509 SUPERFAMILY TPR-like 403 500 IPR011990 GO:0005515
Glsi03g2208 509 Gene3D Transferase(Phosphotransferase) domain 1 150 339 - -
Glsi03g2208 509 Gene3D Phosphorylase Kinase; domain 1 47 148 - -
Glsi03g2208 509 MobiDBLite consensus disorder prediction 1 50 - -
Glsi03g2208 509 ProSiteProfiles Protein kinase domain profile. 73 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g2208 509 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 3 504 IPR045845 GO:0004672|GO:0009742
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g2208 Glsi-ChrGlsi03 82495239 82500362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g2208 58 336 Glycoside Hydrolase AT3G07070 36.601 4.57e-47 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Glsi03g2208 PK_Tyr_Ser-Thr 1e-26 CL0016