LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi03g2195	ATGGATTCGCTCAGAAAATCCTTTAAATCCTATTATTCATACAAAGATACAAGAAAGATTTCCGCAGGGACAAACGCTGACTCCGGCCACGAACAACTTCCCATTCTCTTGGATCAAGAAACTTCAGACGATCATCACCGTACTCCTCCATCAATGACCACCTCTACTCCCACCCCCCGCCCGGAGTTTATCGTTAAAATCGATGAAGGCGACTCCAAAGGCCTTGGCGTCATGCAAAGTAATAAGATTTGGAGAGAATCCAGCTATGATTTCTTAAATGAAGATGTCAGCAAGAGTGTCACTGGTGGGACTGCTGGTGCCAGTGTTAATGATGAGGATGCTTTTAATTTCCGCCAACATGGGCAGGCTTCCGAGGATCCACCCTCCATGCTGATTGGTAAGTTCTTGCACAAACAGAAAGCCTCCGGTGACCTGGCGCTTGATATGGATTTGGAAATGGAGGAGCTCCAACATGACCACAAGTTGCCTCCGGTGGACGAGTCTCCCCCAGTTAATCGGATTAACAAGGACCTTAAAGTCTCGTTCGAGGAACCCGCTTCCAATGTGGTTGATACGGCAAACGATTCCGTAAGACGAAGGCATAGGGACTCACCCAGTAACGCAGAATCTCAAAGACAGCAGGAGCACCATCATCGCGGGTCTCCGGGTGTAGCTCAAAGTGGTAATGCAGATGGTGGAGCTGGCGAGGTAGTGAGATGTACCTCCAACGCCTCTTTCGAAAGGAACCAATCGTTCCAGAGGAAATCTACCTTGCTGAAGGCCAAAACTAGGTCAAGATTGATGGATCCACCGGAGGAACCGGACCGGAGGTCTGGTAGGGTGCCAAAATCAGGGCAGCTGTTATCGGGGTTTTTGGGGAAGAGAGGGGAGGATGAAGAAGACGATCCATTTTCGGAAGACGACCTGCCGGATGAGTATAAAAATACCCATTTTAGCATATGGGTTCTGCTTGAGTGGTTGAGCTTGATTTTGATTGTTGCTGCGCTAGTATGCACGCTGAGTATTCCAGTTTTGAGGAATAAGAATCTCTGGAAGCTAAAGTTATGGAAATGGGAGGTGATGGTCTTGGTCCTAATTTGTGGTCGGTTAGTTTCTGATTGGGTAATCCGAATAGTGGTGTTCTTCATCGAACGGAGTTTCCTTTTGCGTAAGAGAGTCCTCTATTTTGTATACGGTGTGAGGAAGGCAGTTCAAAATTGTCTATGGTTGGGTTTGGTTTTGATTGCTTGGCATCTATTATTTGATAAGAAAGTTGAGAGGGAGACTAAAAGTAACTTCCTCGAATATGTCACCAAGGTCTTGGTCTGTTTCTTGGTGGGTACTGTGGTGTGGTTGTTGAAAACTCTTGCTGTTAAGGTACTGGCTTCTTCCTTCCATGTAAGCACATACTTTGATAGGATTCAGGAGTCACTATTTAATCAATTTGTGATCGAAACACTGTCGGGGCCACCTCTAATCGAAATTCAAAAGTCAGAGGAAGAGGAGCAAAAGCTTGCTGATGAGGTTCAGAAGCTGCAGAATGCTGGGGTTACCATACCCCCTGACCTTAAGGCAACTGCCTTCTCTTCGAACAAAAGTGGAAGGGTAATGAAGAGCGGCGTGCTCCCGAAAAGTCCCCGTATTATAAGTGGGAAGTTTTCTCGGCCACTTTCTCATAAGTCAGATGATGGAATAACTATTGATCACCTCCACAAGCTGAATCCGAAAAATGTCTCCGCCTGGAATATGAAAAGGTTAATGAATATGGTCCGCCAAGGCACTCTTTCTACACTAGATGAACAGATACTTGATTCAGCTCATGACGATGAAAATGGCACACAGATTAGGAGTGAAAATGAGGCAAAAGCTGCAGCAAAGAAAATATTTCAGAATGTTGCTAGGCGGGGATGCAGGTTCCTATATTTGGAGGATTTGATGCGTTTTATGCGAGAAGATGAAGCTGAAAAAACCATGAATCTCTTTGAAGGAGCGTCTGAGACTGGGAAAATCAGCAAATCTGCCTTGAAGAACTGGGTGGTCAATGCCTTCAGAGAGAGGAGAGCACTTGCTTTGACATTGAATGATACCAAAACGGCAGTGAATAAGCTTCATCGAATGCTCAATTTTTTAGTCGGCATTATTATACTGGTTATTTGGCTCTTAATATTGGAAATCGCCACAACCAAATTTCTTCTCTTCGTGAGCTCACAGCTTGTCTTGGTTGCGTTCATATTTGGAAATACTTGCAAGACGGTATTTGAAGCAATTATTTTCTTATTTGTCATGCATCCATTTGACGTGGGAGATAGGTGTGAAATTGATGGGGTCCAGATGGTTGTAGAAGAAATGAACATATTGACAACCATATTTTTAAGATATGACAATCAAAAAATTATGATCCCTAACAGTGTCCTTGCTACCAAGGCCATAAATAATTACTACCGGAGTCCTGATATGGGAGATGCTGTTGATTTCTGTATACATGTGTCTACCCCACTTGAAAAGATGGCACTTATGAAACACAGAATACAGAGTTACATCGATAACAAGAAAGAGCACTGGTATCCTTCTCCTTTTATAGTCTTCAGGGAACTGGAACAGTTAAACATGGTGAAAATGTCAGTTTGGCCAACTCATAGAATGAACCATCAAGACATGGGAGAAAGGTTTATCAGGAGATCCCTTTTGATTGAAGAGATGATCAAGATATTCCGGGAGCTTGACATTCAGTACCGTCTGCTGCCTCTTGATATTAGCATTAGAAGCATGCCTACCACTTCTGATCGCCTTCCACCTAGTTGGGCCACAATCCAAAGTTGA	2820	0.4404	MDSLRKSFKSYYSYKDTRKISAGTNADSGHEQLPILLDQETSDDHHRTPPSMTTSTPTPRPEFIVKIDEGDSKGLGVMQSNKIWRESSYDFLNEDVSKSVTGGTAGASVNDEDAFNFRQHGQASEDPPSMLIGKFLHKQKASGDLALDMDLEMEELQHDHKLPPVDESPPVNRINKDLKVSFEEPASNVVDTANDSVRRRHRDSPSNAESQRQQEHHHRGSPGVAQSGNADGGAGEVVRCTSNASFERNQSFQRKSTLLKAKTRSRLMDPPEEPDRRSGRVPKSGQLLSGFLGKRGEDEEDDPFSEDDLPDEYKNTHFSIWVLLEWLSLILIVAALVCTLSIPVLRNKNLWKLKLWKWEVMVLVLICGRLVSDWVIRIVVFFIERSFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWHLLFDKKVERETKSNFLEYVTKVLVCFLVGTVVWLLKTLAVKVLASSFHVSTYFDRIQESLFNQFVIETLSGPPLIEIQKSEEEEQKLADEVQKLQNAGVTIPPDLKATAFSSNKSGRVMKSGVLPKSPRIISGKFSRPLSHKSDDGITIDHLHKLNPKNVSAWNMKRLMNMVRQGTLSTLDEQILDSAHDDENGTQIRSENEAKAAAKKIFQNVARRGCRFLYLEDLMRFMREDEAEKTMNLFEGASETGKISKSALKNWVVNAFRERRALALTLNDTKTAVNKLHRMLNFLVGIIILVIWLLILEIATTKFLLFVSSQLVLVAFIFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDGVQMVVEEMNILTTIFLRYDNQKIMIPNSVLATKAINNYYRSPDMGDAVDFCIHVSTPLEKMALMKHRIQSYIDNKKEHWYPSPFIVFRELEQLNMVKMSVWPTHRMNHQDMGERFIRRSLLIEEMIKIFRELDIQYRLLPLDISIRSMPTTSDRLPPSWATIQS	939

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi03g2195	939	SUPERFAMILY	Sm-like ribonucleoproteins	754	813	IPR010920	-
	Glsi03g2195	939	MobiDBLite	consensus disorder prediction	194	219	-	-
	Glsi03g2195	939	Coils	Coil	495	515	-	-
	Glsi03g2195	939	PIRSF	Memb_At2g17000	39	939	IPR016688	-
	Glsi03g2195	939	FunFam	Predicted mechanosensitive ion channel	764	813	-	-
	Glsi03g2195	939	Gene3D	-	764	813	IPR023408	-
	Glsi03g2195	939	MobiDBLite	consensus disorder prediction	265	280	-	-
	Glsi03g2195	939	MobiDBLite	consensus disorder prediction	185	236	-	-
	Glsi03g2195	939	MobiDBLite	consensus disorder prediction	19	62	-	-
	Glsi03g2195	939	MobiDBLite	consensus disorder prediction	251	308	-	-
	Glsi03g2195	939	Pfam	Mechanosensitive ion channel	706	910	IPR006685	GO:0016020\|GO:0055085
	Glsi03g2195	939	PANTHER	MECHANOSENSITIVE ION CHANNEL PROTEIN 5	44	934	IPR016688	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi03g2195	Glsi-ChrGlsi03	82405347	82409085	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi03g2195	60	939	Mechanosensitive Ion Channel Family	AT1G78610	59.076	0.0	982