Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g2176 ATGGATTTTGATGAATATGAGTACTTAGAGAAAACAGTTGAAAATCCAGAACTTCAGAAGAAGGAAAAAGCTAATGGTAGGGATGGAAATGTGAAATCTGAAGAGGGAGATCATACACGGAGTTCCAAGCATAAGGCTGGTAAGAAGGACTATGATGTTGGCCATTATTCCAAGAAATTAAAATCTGGAGATGATTCTCATGATTATGACCATCGTAAAGAAAGAGAGTCATCTCGTCATCATTCACTGTCCAGAGATGGAGACAAGGAGAAGGATCAGCACAGAAACACCAGGGACAGTAGGGATAGGGTGAGTGATAGGGACAAAGACAAGGAAGAGAAGTATGGTAGAGAGAGGGACAAACAATGGGAACATGACCGTGACCGAGAAAAAGACAGAAGAGATCGGAGGAGTGAGAGTGAAAGAGAAAGGGAGAGAGATCGCTCACGGCGAAGCATAAGTAGATCTGAAAGGCATCGGAGTGATTTGGATGAAAGTGAAAGAGAGAGGAGTCGTGATAGGGACTACAGAGATAGAGAAAGAAGCCGGGACAAGGATTACAAAGACAGAGAAAGGGAGAGGGAATCAAAGGAGCGAGATAGAGATGGCAGACGATATAAAGAGAAAAAGGAAGAAGCAGCAGAACCTGAGGTTGATCCTGAACGAGATCAGAGGACTGTGTTTGCTTATCAGATTTCTCTAAAAGCAAATGAAAGAGACGTATATGAGTTCTTCTCAAGGGCTGGCAAGGTCCGAGATGTTCGCCTGATAATGGATCGCAATTCAAGACGTTCTAAGGGTGTTGGGTATATTGAGTTCTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTTCCGGCCAACCTCTTCTTGGTCAACCAGTTATGGTGAAGCCTTCAGAAGCAGAAAAGAATTTGGTTCAGTCTACTACGTCTGTATCTAGCGGTTCCACTGGACTTACAGGCCCTTATTCTGGGGGAGCAAGAAGGCTCTATGTTGGCAATCTGCATTTCAGTATTACTGAAGCTGATCTTCGTAGGGTGTTTGAAGCATTTGGTCAGGTTGAGCTAGTCCAGCTGCCTCTTGATGAAAGCGGGCACTGCAAAGGTTTTGGGTTTGTGCAGTTTGCACGCCTTGAAGATTCAAGAAATGCCCAGAGCTTAAATGGGCAATTGGAGATTGGCGGCAGGACGATCAAGGTATCAGCTGTCACTGATCAAACTGGAATGCAAGAAATTGGAGGAAATACTGGTGATTTTGATGATGATGATGATGGTAGTGGCTTGTCCTTAAACGCATGTTCTCGAGCACTACTGATGCAGAAGTTGGATCGCAGTGGCACTGCATCAGGCATTACTGGTTCCCTTGGTAATTCTGTTGCCAACAACACAGGCCTTAATCTACCAGCAGCAGCTCTTCTGGGAGCTGCGCCTGTGGGTTCTCCACTGGCTTCTCCCCTTGCTTCTGTTCCTGCAGTAACTGGAATGCCAGGTGGAAGCCTCCAAATTCCCACAGCTACTGCTACAATTCCTACCATTGATACAATTGGTGTTCCAAGTGAATTCTTATTGTTGAAGAATATGTTTGATCCTAAAGATGAGAAGGAACCAGACTTTGATTTGGATATTAAAGAAGATGTTGAAGCAGAATGCTCTAAGTTTGGAAAGTTGAAACATATATATGTCGACAAGAATAGTGCTGGTTTTGTCTACTTACGATTTGAAAATACTCAATCTGCAATAAATGCACAGCGGTCTCTGCATGGGAGATGGTTTGCTGGGAAGATGATCACTGCAAGCTTCATGGTGCTTCATTCATATGAGGATAAATTCCCTGACAGCAGATAG 1848 0.4405 MDFDEYEYLEKTVENPELQKKEKANGRDGNVKSEEGDHTRSSKHKAGKKDYDVGHYSKKLKSGDDSHDYDHRKERESSRHHSLSRDGDKEKDQHRNTRDSRDRVSDRDKDKEEKYGRERDKQWEHDRDREKDRRDRRSESERERERDRSRRSISRSERHRSDLDESERERSRDRDYRDRERSRDKDYKDRERERESKERDRDGRRYKEKKEEAAEPEVDPERDQRTVFAYQISLKANERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTSVSSGSTGLTGPYSGGARRLYVGNLHFSITEADLRRVFEAFGQVELVQLPLDESGHCKGFGFVQFARLEDSRNAQSLNGQLEIGGRTIKVSAVTDQTGMQEIGGNTGDFDDDDDGSGLSLNACSRALLMQKLDRSGTASGITGSLGNSVANNTGLNLPAAALLGAAPVGSPLASPLASVPAVTGMPGGSLQIPTATATIPTIDTIGVPSEFLLLKNMFDPKDEKEPDFDLDIKEDVEAECSKFGKLKHIYVDKNSAGFVYLRFENTQSAINAQRSLHGRWFAGKMITASFMVLHSYEDKFPDSR 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g2176 615 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 614 IPR006509 GO:0003723|GO:0005634|GO:0006397
Glsi03g2176 615 SMART rrm1_1 226 298 IPR000504 GO:0003723
Glsi03g2176 615 SMART rrm1_1 522 600 IPR000504 GO:0003723
Glsi03g2176 615 SMART rrm1_1 330 402 IPR000504 GO:0003723
Glsi03g2176 615 CDD RRM3_RBM39_like 520 602 - -
Glsi03g2176 615 CDD RRM1_RBM39_like 226 298 - -
Glsi03g2176 615 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 329 406 IPR000504 GO:0003723
Glsi03g2176 615 SUPERFAMILY RNA-binding domain, RBD 518 601 IPR035979 GO:0003676
Glsi03g2176 615 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 545 597 IPR000504 GO:0003723
Glsi03g2176 615 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 331 400 IPR000504 GO:0003723
Glsi03g2176 615 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 235 294 IPR000504 GO:0003723
Glsi03g2176 615 Gene3D - 155 310 IPR012677 -
Glsi03g2176 615 Gene3D - 311 411 IPR012677 -
Glsi03g2176 615 SUPERFAMILY RNA-binding domain, RBD 327 422 IPR035979 GO:0003676
Glsi03g2176 615 FunFam Splicing factor CC1-like 160 310 - -
Glsi03g2176 615 FunFam Splicing factor, CC1-like protein 516 615 - -
Glsi03g2176 615 SUPERFAMILY RNA-binding domain, RBD 220 327 IPR035979 GO:0003676
Glsi03g2176 615 NCBIfam splicing factor, CC1-like family 108 613 IPR006509 GO:0003723|GO:0005634|GO:0006397
Glsi03g2176 615 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 521 604 IPR000504 GO:0003723
Glsi03g2176 615 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 225 302 IPR000504 GO:0003723
Glsi03g2176 615 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 422 539 IPR029123 -
Glsi03g2176 615 SMART rrm2_1 330 402 IPR003954 GO:0003676
Glsi03g2176 615 SMART rrm2_1 522 600 IPR003954 GO:0003676
Glsi03g2176 615 FunFam CC1-like, splicing factor 324 433 - -
Glsi03g2176 615 MobiDBLite consensus disorder prediction 1 222 - -
Glsi03g2176 615 Gene3D - 516 615 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g2176 Glsi-ChrGlsi03 82279883 82288800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g2176 226 392 Eukaryotic Initiation Factors Gene Family AT4G34110 28.994 1.48e-13 72.0