Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g2153 ATGGGAAGGTCACCTTGCTGTGAAAAAGCTCACACAAATAAAGGAGCATGGACCAAAGAAGAAGATGATCGCCTTATAGCTTACATTCGTGCTCACGGTGAGGGCTGCTGGCGCTCTCTCCCCAAAGCCGCTGGCCTTCTCCGATGTGGCAAGAGTTGTCGTCTCCGCTGGATCAACTATCTCCGTCCCGACCTCAAACGTGGCAATTTCACCCAAGAAGAAGATGAACTCATCATCAAACTCCATAGTCTACTCGGCAACAAGTGGTCTCTGATTGCTGCAAGATTACCCGGGAGAACAGACAATGAGATAAAGAATTACTGGAATACTCATATCAGGAGAAAGCTTCTGAACAGAGGGATTGACCCTGCCACTCACAGGCCTCTTAACGAGGCCTCTCACAATCAAGAACCCACCACAATATCTTTCGCTTCATCTGCTGCTGCTAAGCAAGAAACAGAAAGCAAGGCAAGCGTCTTAGAACCATGTCCTGACTTGAACCTTGAGCTAACCATCAGTCCTCCCCAGCCATTGAAGAGTAGCCTCTGTCCCGCTTGCAGCTTGGGTTTGCAGAATAGTAAGGGTTGCAGCTGTGGAATTGCAATTGCTAGCGGAAGCAGCACTAGCGGTTTTGATTTCTTGGGCTTGAAAAGCAGTGTTTTGGAATTGGATTACAGAAGCTTGGAAATGAAATAG 696 0.4784 MGRSPCCEKAHTNKGAWTKEEDDRLIAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTQEEDELIIKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEASHNQEPTTISFASSAAAKQETESKASVLEPCPDLNLELTISPPQPLKSSLCPACSLGLQNSKGCSCGIAIASGSSTSGFDFLGLKSSVLELDYRSLEMK 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g2153 231 FunFam MYB-related transcription factor 13 66 - -
Glsi03g2153 231 CDD SANT 69 112 IPR001005 -
Glsi03g2153 231 Gene3D - 69 156 - -
Glsi03g2153 231 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Glsi03g2153 231 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Glsi03g2153 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Glsi03g2153 231 CDD SANT 16 61 IPR001005 -
Glsi03g2153 231 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Glsi03g2153 231 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Glsi03g2153 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Glsi03g2153 231 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 153 - -
Glsi03g2153 231 FunFam MYB transcription factor MYB48 69 164 - -
Glsi03g2153 231 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Glsi03g2153 231 SMART sant 13 63 IPR001005 -
Glsi03g2153 231 SMART sant 66 114 IPR001005 -
Glsi03g2153 231 Gene3D - 14 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g2153 Glsi-ChrGlsi03 82150656 82151430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g2153 1 231 MYB Transcription Factor Family AT4G38620 60.284 1.58e-108 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi03g2153 Myb_DNA-binding 2.9e-14 CL0123