Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g2130 ATGTTTGGATTTTGTTTAGCTGCAATAAATCAGCTACAACAAAAATACTCACACCACCACTTCTCTGAATTTCGTCGAACACCTCTATATTCTTGCGTGCCTTCTAGTCATTTCCGACCTAATTTTAGGTATGAAGGCCTGCCTTATGATTATTTGCTTGCAGTTTATCATTTTTCTGAAGGACTGAAGCCTATGGATTGTACAGCTGCTAGAAAAACTCAAAAGGCTGACAGAGAAAAATTAAGAAGGGATCGACTCAATGAACAATTTGTAGAACTGGGTAGCATTTTAGACCCTGATAGGCCCAAAAATGACAAAGCAACCATTCTTGCTGATACAATTCAATTGCTGAAGGACTTTACTTCTCAAGTTAGTAAACTCAAAGATGAATATGCTGTCTTGACTGAAGAATCCCAAGAGTTGACTCAGGAGAAAAATGATCTTAGAGAAGAGAAAGCTTCTCTTAAATCTGATATTGAGAGCTTGAATAATCAGTACCAGCAACGCCTCAGAACTATGTTTCCATGGACTGCAATGGATCACTCAGTTATGATGGCTCCACCTTCATATCCGTATCCAGTGCCAGTGCCAGTCCCTCCTGGTGCAATTCCTATGCATCCACCCATGCCGCCATACCCTTTCTTTGCAAATCAAAATCCTGGGGTCATTCCTAATCCCTGTTCAACATTTGTTCCTTATCTGGCCCCTAATACTCTTGTTGAGCAGCAATCCACGCAATATGTATCCCCACCACTTCATCCACGTAGCCATTCCCATGCATCAGGCAAACAAGATTCCAAAAACAAATCATCCAGGGAGAGCAAGGTTGGAAATAACGAGGGTGCTCATGATGTCACCACAGACCTGGAGTTGAAGACTCCTGGATCTTCTACTGATCAGGATTTATCATCTGGGAAAAGAAAATGCAGCAAGATGTCAAAGAAGGAAAGCAGTTGCACAGAAGGGAGTTCATCAGGTAGGTGTTCTTCATGTCATAGCATACAGGATAGCTCATCAAGCAGTGTAGTTGGGAGCAGAATAGCTGATGAATGA 1053 0.4188 MFGFCLAAINQLQQKYSHHHFSEFRRTPLYSCVPSSHFRPNFRYEGLPYDYLLAVYHFSEGLKPMDCTAARKTQKADREKLRRDRLNEQFVELGSILDPDRPKNDKATILADTIQLLKDFTSQVSKLKDEYAVLTEESQELTQEKNDLREEKASLKSDIESLNNQYQQRLRTMFPWTAMDHSVMMAPPSYPYPVPVPVPPGAIPMHPPMPPYPFFANQNPGVIPNPCSTFVPYLAPNTLVEQQSTQYVSPPLHPRSHSHASGKQDSKNKSSRESKVGNNEGAHDVTTDLELKTPGSSTDQDLSSGKRKCSKMSKKESSCTEGSSSGRCSSCHSIQDSSSSSVVGSRIADE 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g2130 350 Coils Coil 69 89 - -
Glsi03g2130 350 MobiDBLite consensus disorder prediction 244 350 - -
Glsi03g2130 350 MobiDBLite consensus disorder prediction 258 279 - -
Glsi03g2130 350 CDD bHLH_AtILR3_like 75 149 - -
Glsi03g2130 350 PANTHER TRANSCRIPTION FACTOR BHLH121 63 345 IPR044579 GO:0003700|GO:0006879
Glsi03g2130 350 SMART finulus 76 126 IPR011598 GO:0046983
Glsi03g2130 350 Pfam Helix-loop-helix DNA-binding domain 71 118 IPR011598 GO:0046983
Glsi03g2130 350 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 70 141 IPR036638 GO:0046983
Glsi03g2130 350 Gene3D - 66 131 IPR036638 GO:0046983
Glsi03g2130 350 MobiDBLite consensus disorder prediction 316 350 - -
Glsi03g2130 350 Coils Coil 110 172 - -
Glsi03g2130 350 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 70 120 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g2130 Glsi-ChrGlsi03 82035313 82037522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g2130 46 301 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 60.853 2.45e-96 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi03g2130 HLH 9.5e-09 No_clan