Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g2099 ATGTCTACGTTCAGCGGCGATGAGACGGCACCTTTTTTCGGCTTCCTCGGAGCCGCAGCTGCCCTTGTTTTCTCCTGTATGGGAGCTGCCTATGGCACAGCAAAGAGTGGTGTGGGTGTGGCTTCAATGGGTGTGATGAGACCTGAGTTGGTGATGAAGTCCATTGTTCCTGTTGTTATGGCTGGAGTCTTGGGTATTTATGGCCTTATTATTGCTGTTATAATTAGTACTGGCATAAATCCTAAGGCCAAATCTTATTACCTCTTTGATGGTTATGCACATCTCTCTTCTGGTCTTGCCTGTGGACTGGCTGGTCTTTCTGCTGGCATGGCTATTGGTATCGTTGGTGATGCTGGTGTTAGAGCTAATGCACAGCAACCAAAACTTTTTGTTGGAATGATTCTCATCCTCATCTTCGCTGAAGCTCTTGCCCTCTATGGTCTCATTGTCGGTATTATCCTGTCTTCTCGTGCCGGCCATTTTTGTGCTGCTGAAATTGGTGATGTGATGATTGGATTACCAATGAAACTTCCTTGTGTTCATAAATCTTTCCATATTGGACATCGATAA 570 0.4544 MSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGHFCAAEIGDVMIGLPMKLPCVHKSFHIGHR 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g2099 189 SUPERFAMILY F1F0 ATP synthase subunit C 13 76 IPR035921 -
Glsi03g2099 189 Gene3D - 10 160 IPR035921 -
Glsi03g2099 189 PRINTS Vacuolar ATP synthase 16kDa subunit signature 29 53 IPR000245 GO:0033179|GO:0046961|GO:1902600
Glsi03g2099 189 PRINTS Vacuolar ATP synthase 16kDa subunit signature 106 132 IPR000245 GO:0033179|GO:0046961|GO:1902600
Glsi03g2099 189 PRINTS Vacuolar ATP synthase 16kDa subunit signature 133 156 IPR000245 GO:0033179|GO:0046961|GO:1902600
Glsi03g2099 189 PRINTS Vacuolar ATP synthase 16kDa subunit signature 55 79 IPR000245 GO:0033179|GO:0046961|GO:1902600
Glsi03g2099 189 SUPERFAMILY F1F0 ATP synthase subunit C 86 155 IPR035921 -
Glsi03g2099 189 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 159 - -
Glsi03g2099 189 CDD ATP-synt_Vo_c_ATP6C_rpt1 12 79 - -
Glsi03g2099 189 FunFam V-type proton ATPase proteolipid subunit 10 161 - -
Glsi03g2099 189 Pfam ATP synthase subunit C 16 75 IPR002379 GO:0015078|GO:0033177|GO:1902600
Glsi03g2099 189 Pfam ATP synthase subunit C 96 154 IPR002379 GO:0015078|GO:0033177|GO:1902600
Glsi03g2099 189 NCBIfam V-type ATPase subunit C 12 120 IPR011555 GO:0033179|GO:0046961|GO:1902600
Glsi03g2099 189 CDD ATP-synt_Vo_c_ATP6C_rpt2 88 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g2099 Glsi-ChrGlsi03 81897785 81899939 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g2099 1 160 Primary Pumps ATPases(2) AT2G16510 99.375 4.27e-108 305