Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g2090 ATGCGAACCCTTTGTGACGTGTGCGAGAATGCTGCTGCTATTCTCTTCTGCGCAGCAGATGAGGCTGCTCTCTGCCGTGCATGCGATGAAAAGGTCCACACATGCAACAAGCTTGCTAGTAAACATGTGCGAGTTAGGTTGGCTGACCCCACTGACGTTCCACGCTGTGACATATGTGAAAACGCACCAGCTTTCTTTTACTGTGAGATAGATGGTAGTTCGCTGTGTCTTCAATGTGATATGATTGTACATGTTGGTGGTAAAAGAACCCATGAAAGATATCTTCTATTGAGGCAGAGAGTTGAGTTTCCAGGCAACAAACCTAGCCGATTGGAAGAACTAGGGCTGCAACCCCTTGATCAAAATGAATTAAGGAAGGACCAAAATCAGTCACTTAAGCTAAAAGCAAGAGATGGTCTCCAGAATCACAGGGTCCCACCTGTTCTAATGCTAGATAATAATGTTGATGGTCAAGACAATATGGATAAAAAACTAATTGACCTTAATACTAAGCCACAACGGTTAAATGGACCAGCGTCAAACAACCAGGAATCGGGTATGGATATTTCAAGTGGCAATAACCATGAATCTGCAAGAGTTGTCCCAGTAGAATCCTTCAAACGAGAGGCTGAGAAGTAA 639 0.4382 MRTLCDVCENAAAILFCAADEAALCRACDEKVHTCNKLASKHVRVRLADPTDVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHERYLLLRQRVEFPGNKPSRLEELGLQPLDQNELRKDQNQSLKLKARDGLQNHRVPPVLMLDNNVDGQDNMDKKLIDLNTKPQRLNGPASNNQESGMDISSGNNHESARVVPVESFKREAEK 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g2090 212 MobiDBLite consensus disorder prediction 169 212 - -
Glsi03g2090 212 Pfam B-box zinc finger 53 92 IPR000315 GO:0008270
Glsi03g2090 212 Pfam B-box zinc finger 3 44 IPR000315 GO:0008270
Glsi03g2090 212 Gene3D Classic Zinc Finger 2 95 - -
Glsi03g2090 212 CDD Bbox1_BBX-like 56 96 - -
Glsi03g2090 212 MobiDBLite consensus disorder prediction 173 198 - -
Glsi03g2090 212 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 163 - -
Glsi03g2090 212 CDD Bbox1_BBX-like 4 47 - -
Glsi03g2090 212 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Glsi03g2090 212 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Glsi03g2090 212 SMART bboxneu5 1 47 IPR000315 GO:0008270
Glsi03g2090 212 SMART bboxneu5 51 96 IPR000315 GO:0008270
Glsi03g2090 212 FunFam B-box zinc finger protein 19 2 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g2090 Glsi-ChrGlsi03 81795803 81797776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g2090 1 212 C2C2-CO-like Transcription Factor Family AT4G38960 60.849 1.18e-85 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Glsi03g2090 zf-B_box 3.4e-06 No_clan