Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g2079 ATGGAGGTTGTCGTAGCGAAAGCGTTGAAATCAAGTTTACGCAGAGAATTGGCGTTCATGAAATCAAACCAGCAACCTTTTGGCGAGGAAATTTGGTGCTTGAATGCAAATAACGGGGTTGCGGTTGAGGATTTCTCTGTGGATGACCTCCTTGACCTCTCCCAAGGTGACTTCCAACACTCTGTTGGGAACGGAAATGAATATGAAGAAGAGGAGGACAAAGACAGTCTCTCTGTTTCCTCACAGGACCGTGGCGAAGACGACAGCAACTCCAATTCCTCTTCCGGCACCGGCGATTCTCAGTACCATTTTTCTAACGAACTGGCCGTTCCGAACGATGATTTGGCAGACCTAGAGTGGGTTTCTCATTTCGTGGACGATTCTCTCCCAGAGCTCTCTCTATTGTATCCCGTGCGTTCAGAGCAAGCAAAGACGACGAGGTCTGAACCGGAACCTAGACCGGACTTTGCGAAAACTCCTTGTTTTCCCTTCGAAATTCCCGTCAAGGCGAGAAGAACCAAGGGTAGAAAAGCCAACTTTCGAGTCAGGTCGTTTAGCCCCTTACTTTCCCGGCCATCTTCGCCGTCTTCATTTTCATCTGGATTTTCTTCGACGCCGACTCTCATAACCGCCGACGCCGTTCCGAACACTGCCTTTTCACACGGCGTAAGTGAACCGCCGGCGAAGAAGCAGAAGAAAAAGGCGGAGACTCAAGCCAGTGGGTCCCAGTTTCAGCGTCGGTGCAGTCATTGCCAGGTGCAGAAGACACCACAGTGGAGAACCGGTCCCCTGGGCGCCAAAACCCTTTGTAACGCTTGTGGGGTTCGGTACAAGTCCGGTCGGCTTTTTCCGGAGTACAGACCGGCCTGTAGCCCAACCTTCTCCGGCGATGTTCACTCCAACAGTCATCGTAAAGTGTTAGAGATGAGAAAGAGGAAAGAGATGACTGGACCGGAGGCCGATTTGACGCCGGCCCAAATGGTTCCGAGTTGCTGA 996 0.5171 MEVVVAKALKSSLRRELAFMKSNQQPFGEEIWCLNANNGVAVEDFSVDDLLDLSQGDFQHSVGNGNEYEEEEDKDSLSVSSQDRGEDDSNSNSSSGTGDSQYHFSNELAVPNDDLADLEWVSHFVDDSLPELSLLYPVRSEQAKTTRSEPEPRPDFAKTPCFPFEIPVKARRTKGRKANFRVRSFSPLLSRPSSPSSFSSGFSSTPTLITADAVPNTAFSHGVSEPPAKKQKKKAETQASGSQFQRRCSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFPEYRPACSPTFSGDVHSNSHRKVLEMRKRKEMTGPEADLTPAQMVPSC 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g2079 331 MobiDBLite consensus disorder prediction 56 106 - -
Glsi03g2079 331 PIRSF Txn_fac_GATA_plant 8 329 IPR016679 GO:0003677|GO:0005634|GO:0045893
Glsi03g2079 331 ProSitePatterns GATA-type zinc finger domain. 248 273 IPR000679 GO:0006355|GO:0043565
Glsi03g2079 331 FunFam GATA transcription factor 237 323 - -
Glsi03g2079 331 ProSiteProfiles GATA-type zinc finger domain profile. 242 278 IPR000679 GO:0006355|GO:0043565
Glsi03g2079 331 PANTHER GATA TRANSCRIPTION FACTOR 32 320 - -
Glsi03g2079 331 CDD ZnF_GATA 247 296 IPR000679 GO:0006355|GO:0043565
Glsi03g2079 331 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 244 305 - -
Glsi03g2079 331 SMART GATA_3 242 296 IPR000679 GO:0006355|GO:0043565
Glsi03g2079 331 Pfam GATA zinc finger 248 281 IPR000679 GO:0006355|GO:0043565
Glsi03g2079 331 Gene3D - 241 291 IPR013088 GO:0006355|GO:0008270
Glsi03g2079 331 MobiDBLite consensus disorder prediction 83 106 - -
Glsi03g2079 331 MobiDBLite consensus disorder prediction 217 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g2079 Glsi-ChrGlsi03 81744580 81745695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g2079 8 316 C2C2-Gata Transcription Factor Family AT5G66320 40.588 1.22e-60 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Glsi03g2079 GATA 1.1e-15 CL0167