Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g2074 ATGAAGATCCAGTGTGATGTGTGTGATAAAGAGGAGGCCTCTCTATTCTGTCCTGCTGATGAAGCAGCCCTCTGCCATGGTTGTGATCGCACCATCCACCACGCCAACAAGCTTGCAGGCAAACATGGTCGCTTCTCTCTCAACCACCCCACCTCTAATCATACCCCACTTTGTGATATCTGCCAAGAGAGGCGAGCATATCTATTTTGCCCAGAAGACAGAGCAATACTTTGCAGAGAATGCGACCTTCCTATTCACAGAGCCAACGAACATACCCAGAAACATAACAGGTTTCTTCTCACGGGTGTGAAGCTCTCTGCTTCTTTTTCAGACTCAGCATCATCATCGTCCTCCAAAGGCACTGATAGAGTCCCTGACTCTAAAGTAAAAAGCTCTCGTTCTAACATAAACACACACACAGCAGTTTCAAATGAAAATGTCAGCTCTTCTTCAATTGTAAATTCTGTAACATCAGCTACCAGCAACGTTGAAGACTACATCATGGCTGGTGATACCAATTCAGTTTCAACAAGCAGCATTTCTGAATACTTGATCGAGAAGATACCTGGTTATTGCTTTGAAGACCTTCTTGATGCTTCATTCGCGGCTAATGGTTTCTGTAAGCGTGGTGGTACCCTCAACTTAGTACTTCGACTCTTCCCCAGATTGGTTATCTGGTTGGAATTAGGCAATACCAATAGAAAACTCTGCCAAAGGGAACTGGAAATGAAGAGGTATTCGGGGCGTATTTTTGATAACCCAAACTCCCCCTTACCAAAAGTTACCCACATAGGAATGGCAACTAAGTTTGGAGTCCCTATTTCTCATAGTAGGGAGATACATTTCTCATCTTCATTTTTCATAGGAAGCAAGTCAATTTCTGATTTACCTTCAGCCCATACCATTCTTCAATTGTGTCAGGAACAGCACCTGCAAAATGCTAGCAAATCCTCCCTATGA 960 0.4365 MKIQCDVCDKEEASLFCPADEAALCHGCDRTIHHANKLAGKHGRFSLNHPTSNHTPLCDICQERRAYLFCPEDRAILCRECDLPIHRANEHTQKHNRFLLTGVKLSASFSDSASSSSSKGTDRVPDSKVKSSRSNINTHTAVSNENVSSSSIVNSVTSATSNVEDYIMAGDTNSVSTSSISEYLIEKIPGYCFEDLLDASFAANGFCKRGGTLNLVLRLFPRLVIWLELGNTNRKLCQRELEMKRYSGRIFDNPNSPLPKVTHIGMATKFGVPISHSREIHFSSSFFIGSKSISDLPSAHTILQLCQEQHLQNASKSSL 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g2074 319 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Glsi03g2074 319 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Glsi03g2074 319 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 236 - -
Glsi03g2074 319 CDD Bbox1_BBX-like 5 47 - -
Glsi03g2074 319 FunFam B-box zinc finger protein 21 1 98 - -
Glsi03g2074 319 Gene3D Classic Zinc Finger 1 98 - -
Glsi03g2074 319 MobiDBLite consensus disorder prediction 110 143 - -
Glsi03g2074 319 Pfam B-box zinc finger 56 92 IPR000315 GO:0008270
Glsi03g2074 319 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270
Glsi03g2074 319 CDD Bbox1_BBX-like 57 100 - -
Glsi03g2074 319 SMART bboxneu5 4 47 IPR000315 GO:0008270
Glsi03g2074 319 SMART bboxneu5 53 100 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g2074 Glsi-ChrGlsi03 81680903 81684651 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g2074 1 198 C2C2-CO-like Transcription Factor Family AT4G39070 56.500 2.03e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Glsi03g2074 zf-B_box 3.7e-06 No_clan