Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g2067 ATGGCTATATTTCGGTGCGTTCGGGTGCGCTCTATGGATGGTTCGGTTGATGAATACGCCTACCATACGTCCGTGAAGATTGGAGGGCATGTATTCAGTGGTCTTCTTTATGATCAAGGCCCTGCAGATCGTAGCTTCCATGCTAATGTTGGTGGTGACAGTTCCACAGCCCCTACTGATCTTCAGTACCATAATAATCTTACTAACGCTGCAACCCAAACCCAGGATGGTGCAACCATGGCTTCATTGTTATCAGCTACTTCTGCTGAGTCTATTTTTCCTCCAACATATCCATTTCCCCTAACTGGCTTCATGCCTGGAACTAAGGAGTACAGACGTCCATCACGGGAACAAGGGCGGAACGAAGCAAGCAATGCAAGCACCTTGAGCCCAAATTTAAACCCGGCGAGCCCAAATTTCTGGCGGGAAAATCCTGTCTTCTTCCCGCCATATAGAGCTGCAGAATGTCTAACCAGCTCCACCATCTTCTCTTCCTTTCTATCGGCGTGCTTGCTTCTCTCACAGATAGTCATGGCTTCCGATTCTTCTCCGGTGAATTTCAACAACGGTCCTTCTTCGCCCGAAGATTCCTTTTCCAGTCCAATCGGCAACACATTGTCGTCTCCTGGCGATGCCGCTCGTGGGAGAAGGCGCCGCCGCTCTTCTACTCCATCTGCATTTGCAACTCCTCCATCGAATCGATCCCGATTCGCCTTCTCCGATGCCACCCCAACTCCATCCCGATCCAGGCAAAGGGGAAGTGGGCGGAGAGCTTCCATGTCGACCCCCACGGCTGCCACACCAACCTCCACTGATGACCTACCCATGTCTTCAGAAGGCGGCGAGGGCTACAACATGGACGATGTTAGGCCTACCTTCGTCTGGGGCACTAATATAAGCGTAGAAGACGTAAATGAGGCGATTCAGAGATTTTTGAGGCACTTCAGAGAACAGTCATCTCAGAGTGATGGATTGCATACGGAGGGGAAATATGAGAGGGCTATCAAACTTGTCATTGAAATTGAGGGAGATTCACTAGACGTCGATGCACACGACGTATTTGATTATGATCCGGATTTGTACACGAAAATGGTCAGATACCCGCTCGAGGTTCTTGCAATTTTTGATTTGGTTTTGATGAACATGGTGAGTCGAGTCAACCCGTTGTTCGAGAAGCACATTCAAACTCGAATTTTTAATCTCAAAACCTCAACCTCAATGAGAAATTTGAATCCATCTGATATTGAGAGGATGGTATCATTAAAGGGAATGATTATACGATGTAGCTCAATCATACCAGAAATCAGGGAAGCTATATTTAGATGTCTCGTGTGTGGATACTGCTCTGACCCGGTTGCTGTAGAGAGAGGACGAATAATTGAACCTACTATATGCCTGAGGGAAGAATGTCAAGCCAGAAACGCCATGACACTGGTTCACAACCGATGCAGGTTCACAGACAAGCAAATTGTCAGGCTTCAGGAGACACCTGATGAGATACCTGAAGGGGGAACACCACACACAGTGAGCTTGCTGATGCATGACAAGCTTGTGGATACTGGAAAGCCAGGTGACAGAATTGAGGTGACTGGTATTTATAGGGCTATGAGTGTCAGGCTTGGACCAACTCAAAGAACTGTTAAATCATTGTTCAAGACTTATATTGATTGTCTTCACATAAAGAAGACTGATAATTCAAGGATGCTGGTGGAGGATGCTATGGATGTTGACAGTGGCCTGGGCAAAATTACAGATGAATTTCATTTTGATAAAGAAATGGTGGCTCGACTAAAAGAGCTCTCAAAACAGCCAGATATATATGAAAAGCTGACAAAGTCATTGGCTGCAAACATCTGGGAGCTAGATGATGTGAAGAAAGGTCTTCTTTGTCAGCTTTTTGGTGGCAATGCTTTAAAGTTGGCATCTGGTGCTAACTTCCGTGGAGATATTAATATTCTACTAGTTGGTGATCCTGGAACCAGCAAGTCCCAGCTGCTCCAATACATTCACAAGCTATCTCCTCGCGGCATTTACACCAGTGGAAGGGGGAGCTCTGCAGTTGGATTGACTGCTTATGTGGCCAAAGATCCTGAAACAGGCGAAACTGTTCTAGAGAGTGGTGCCTTGGTTTTGAGTGACAGAGGCATATGCTGTATAGATGAATTTGACAAAATGTCTGACAATGCCCGGAGCATGTTACATGAGGTGATGGAACAACAAACTGTTTCAATAGCAAAGGCAGGTATTATTGCTTCTCTCAATGCTAGGACTTCGGTGTTGGCTTGTGCAAATCCAAGTGGGTCACGATATAATCCTCGCATGTCTGTCATTGACAACATACATCTTCCTCCTACTCTTCTGTCCAGGTTTGATTTGATTTACTTAATTCTTGACAAGGCTGATGAACAGACAGATAGACGACTTGCCAAGCATATTGTCTCCTTACACTTTGAGAATCCTGAGAACATAGAACAAGATGTGTTGGACCTTCCTACATTAACTGCATATGTGAGCTATGCCCGAAAGCATATACACCCACAACTATCTGATGAAGCTGCTGAAGAATTGACTAGAGGCTATGTTGAAATAAGAAGAAGAGGGAATTTTCCTGGGAGTGGCAAAAAGGTTATAACAGCAACACCAAGGCAGATTGAGAGTCTGATACGGCTTAGTGAAGCCTTGGCTCGGATTCGCTTCTCAGAATGGGTTGAAAAGCATGATGTAATGGAGGCTTTTCGGCTTCTGGAAGTTGCAATGCAGCAGTCTGCAACGGATCACTCTACTGGAACGATTGACATGGATCTTATTACCACTGGCGTTTCGGCAAGTGAAAGGATGAGACGAGAGAGTCTGCTGCAAGCAACTCGCAACATAATCATGGAGAAGATGCAAATTGGGGGACCATCAATGCGATTATTGGAGTTATTGGAAGATTTGAAGAAACAGAGCACCCGCGAAGTCCACCTAACTGATCTAAGGAATGCAATTGCTACTCTGGCCAGCGAAGGATTTGTTGCTATGCATGGTGACAGTGTAAAAAGATCATGA 3048 0.4564 MAIFRCVRVRSMDGSVDEYAYHTSVKIGGHVFSGLLYDQGPADRSFHANVGGDSSTAPTDLQYHNNLTNAATQTQDGATMASLLSATSAESIFPPTYPFPLTGFMPGTKEYRRPSREQGRNEASNASTLSPNLNPASPNFWRENPVFFPPYRAAECLTSSTIFSSFLSACLLLSQIVMASDSSPVNFNNGPSSPEDSFSSPIGNTLSSPGDAARGRRRRRSSTPSAFATPPSNRSRFAFSDATPTPSRSRQRGSGRRASMSTPTAATPTSTDDLPMSSEGGEGYNMDDVRPTFVWGTNISVEDVNEAIQRFLRHFREQSSQSDGLHTEGKYERAIKLVIEIEGDSLDVDAHDVFDYDPDLYTKMVRYPLEVLAIFDLVLMNMVSRVNPLFEKHIQTRIFNLKTSTSMRNLNPSDIERMVSLKGMIIRCSSIIPEIREAIFRCLVCGYCSDPVAVERGRIIEPTICLREECQARNAMTLVHNRCRFTDKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDTGKPGDRIEVTGIYRAMSVRLGPTQRTVKSLFKTYIDCLHIKKTDNSRMLVEDAMDVDSGLGKITDEFHFDKEMVARLKELSKQPDIYEKLTKSLAANIWELDDVKKGLLCQLFGGNALKLASGANFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVAKDPETGETVLESGALVLSDRGICCIDEFDKMSDNARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRMSVIDNIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENIEQDVLDLPTLTAYVSYARKHIHPQLSDEAAEELTRGYVEIRRRGNFPGSGKKVITATPRQIESLIRLSEALARIRFSEWVEKHDVMEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRRESLLQATRNIIMEKMQIGGPSMRLLELLEDLKKQSTREVHLTDLRNAIATLASEGFVAMHGDSVKRS 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g2067 1015 SMART mcm 403 920 IPR031327 GO:0003677|GO:0005524|GO:0032508
Glsi03g2067 1015 Pfam MCM P-loop domain 595 816 IPR001208 GO:0003677|GO:0005524|GO:0032508
Glsi03g2067 1015 MobiDBLite consensus disorder prediction 187 207 - -
Glsi03g2067 1015 Pfam MCM N-terminal domain 306 403 IPR027925 -
Glsi03g2067 1015 Pfam MCM OB domain 407 536 IPR033762 -
Glsi03g2067 1015 MobiDBLite consensus disorder prediction 222 276 - -
Glsi03g2067 1015 PRINTS Mini-chromosome maintenance (MCM) protein family signature 786 794 IPR001208 GO:0003677|GO:0005524|GO:0032508
Glsi03g2067 1015 PRINTS Mini-chromosome maintenance (MCM) protein family signature 735 748 IPR001208 GO:0003677|GO:0005524|GO:0032508
Glsi03g2067 1015 PRINTS Mini-chromosome maintenance (MCM) protein family signature 707 721 IPR001208 GO:0003677|GO:0005524|GO:0032508
Glsi03g2067 1015 PRINTS Mini-chromosome maintenance (MCM) protein family signature 647 662 IPR001208 GO:0003677|GO:0005524|GO:0032508
Glsi03g2067 1015 PRINTS Mini-chromosome maintenance (MCM) protein family signature 759 771 IPR001208 GO:0003677|GO:0005524|GO:0032508
Glsi03g2067 1015 SUPERFAMILY Nucleic acid-binding proteins 322 557 IPR012340 -
Glsi03g2067 1015 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 480 492 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Glsi03g2067 1015 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 768 785 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Glsi03g2067 1015 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 622 633 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Glsi03g2067 1015 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 429 442 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Glsi03g2067 1015 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 920 929 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Glsi03g2067 1015 Pfam MCM AAA-lid domain 832 918 IPR041562 -
Glsi03g2067 1015 ProSiteProfiles MCM family domain profile. 606 812 IPR001208 GO:0003677|GO:0005524|GO:0032508
Glsi03g2067 1015 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 618 932 IPR027417 -
Glsi03g2067 1015 Gene3D - 407 546 IPR012340 -
Glsi03g2067 1015 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 304 978 IPR031327 GO:0003677|GO:0005524|GO:0032508
Glsi03g2067 1015 MobiDBLite consensus disorder prediction 104 136 - -
Glsi03g2067 1015 Gene3D - 584 924 IPR027417 -
Glsi03g2067 1015 SMART AAA_5 648 798 IPR003593 GO:0016887
Glsi03g2067 1015 Gene3D - 434 486 - -
Glsi03g2067 1015 ProSitePatterns MCM family signature. 715 723 IPR018525 GO:0003677|GO:0005524|GO:0006260
Glsi03g2067 1015 Pfam Domain of unknown function (DUF702) 2 42 - -
Glsi03g2067 1015 MobiDBLite consensus disorder prediction 120 136 - -
Glsi03g2067 1015 FunFam DNA helicase 434 486 - -
Glsi03g2067 1015 MobiDBLite consensus disorder prediction 187 287 - -
Glsi03g2067 1015 NCBIfam LRP1 C-terminal domain 2 41 IPR006511 -
Glsi03g2067 1015 Gene3D - 925 1011 IPR036388 -
Glsi03g2067 1015 FunFam DNA helicase 587 925 - -
Glsi03g2067 1015 CDD MCM4 609 918 - -
Glsi03g2067 1015 Gene3D - 298 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g2067 Glsi-ChrGlsi03 81617736 81631878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g2067 178 1014 Core DNA Replication Machinery Family AT2G16440 74.852 0.0 1276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Glsi03g2067 MCM 1.1e-99 CL0023