LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi03g2066	ATGGGAGAGGTAGCGCGTGGAGGTTGTTGTCCGCCGATGGATATATTCCGGTCGGAGCCGATGCAGCTGGTTCAGCTCATTATCCCTCTGGATTTGGCTCACCTCACCGTTTCCTACCTCGGTGTATTGCCAATGTATTCTGCAACACAAGTCGATGTGAACATTGATGACCTAGAGGTAAAACTTGCAGAACTTGAGTCAGAGTTAATTGAGAGGAATGCAAAGGCCCACAGCCATGCTGTAGTGCGATGGAGAGAATATGAATCACACCATCTAAGAGGAGAATCTTTGGAAACACCTATATTACAGGACCAGATTGAAAAAAATGTGTTTGTAGTCTTCTATGCTGGTGAAAAAGCCAAAGCCAAGATTCTGAAAATATTTGAGGCTTTTGGTGCAAATCGTTATCCTTTTACTGAGGAACAAGGAAAACAAGCTCAAATGGTTACAGAGGTTTCGGGAAGACTAGAGTTGAAGACTACTATAAATGCTGGGCTGCTACACCGGGGTAACTTGCTACATTCTATTGGGGCTCAATTCGAGCAATGGAATCTTTTGGCGAGGACGGAGAAATCCATATATCATACTCTGAACATGCTTAGCCTTGATGTAACCAAAAGATGTCTTGTGGCTGAGGGGTGGAGTCGAGTTTTTACAACAAAGCAGATCCAAGCTACATTACAGCGAGCAGCAATTGACTCTAACTTTCAAGTTGGTGCAATTTTCCAAGTTTTGCATACAAGGGAATTGCCACCTACATATTTTGGGACAAACAAATTCACTTATTCATTTCAGCGAATTGTAGATGCATATGGGGTGGCTAAATATCAGGAAGCAAACCCTACTGTGTATACAATAATTACCTTTCCATTTCTTTTTGCTGTAATGTTTGGTGATTGGGGGCATGGAATACGATTACTATTGGCCGCTTTGTTTTTCATAATCAGGGAGAAAAAACTTTGTAGCCAGGCCCTACAGATGATTTGGGTGAAAAGTGAAAACCAACTCATTGATGCTTGTCTCTGTGCCCTGGATGCTGATTCCAAAACCTTTTCTTTTGAAGAAGCAACATCAAGATGTATGCTTCCTTTTGTGCTTTATTCAAGTCCTTCTTGTTCTTGTACAATACTTCAGAGGCACCGGGGTGAATCCTATACACAACTTCAAAGTACAGAGGAAAGCTTGCAAATGGAATCAAATCATGATTCCCATGATCATGACGAATTTGAGTTCAGCGAAATCTTTGTACATCAACTCATACATACCATAGAATTTGTACTTGGAGCAGTCTTGAATACAGCTTCTTACCTTCGTCTATGGGCCCTTAGGTTTGCCTTCATAAACTTCATTTTTTCTCCAACGCGCAAACAACACAGTGCTCACTATTATAAAACAGCAGCTTCTTCACTGCTTATGGCTGGTGACTGA	1428	0.416	MGEVARGGCCPPMDIFRSEPMQLVQLIIPLDLAHLTVSYLGVLPMYSATQVDVNIDDLEVKLAELESELIERNAKAHSHAVVRWREYESHHLRGESLETPILQDQIEKNVFVVFYAGEKAKAKILKIFEAFGANRYPFTEEQGKQAQMVTEVSGRLELKTTINAGLLHRGNLLHSIGAQFEQWNLLARTEKSIYHTLNMLSLDVTKRCLVAEGWSRVFTTKQIQATLQRAAIDSNFQVGAIFQVLHTRELPPTYFGTNKFTYSFQRIVDAYGVAKYQEANPTVYTIITFPFLFAVMFGDWGHGIRLLLAALFFIIREKKLCSQALQMIWVKSENQLIDACLCALDADSKTFSFEEATSRCMLPFVLYSSPSCSCTILQRHRGESYTQLQSTEESLQMESNHDSHDHDEFEFSEIFVHQLIHTIEFVLGAVLNTASYLRLWALRFAFINFIFSPTRKQHSAHYYKTAASSLLMAGD	475

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi03g2066	475	Pfam	V-type ATPase 116kDa subunit family	95	328	IPR002490	GO:0033179\|GO:0046961\|GO:1902600
	Glsi03g2066	475	Pfam	V-type ATPase 116kDa subunit family	385	445	IPR002490	GO:0033179\|GO:0046961\|GO:1902600
	Glsi03g2066	475	Coils	Coil	48	75	-	-
	Glsi03g2066	475	PANTHER	VACUOLAR PROTON ATPASES	379	445	IPR002490	GO:0033179\|GO:0046961\|GO:1902600

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi03g2066	Glsi-ChrGlsi03	81609513	81616964	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi03g2066	360	445	Primary Pumps ATPases(2)	AT4G39080	61.111	1.05e-23	102