Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g2061 ATGGCTAAACCAAAGGCTACAAGACGAACCCTAGAGTCATACACAGTCAAACACATAAACAAAACCATTAGAGCCGGCGACTGCGCTCTAATGCGGCCCTCTGAGCCGTCGAAGCCATCTTATGTGGCTAGGATTGAGCGAATCGAAGCCGACTCGCGAGGCGCCAACGTTAAGGTTCACGTCCGTTGGTACTATCGGCCGGAGGAGTCTATAGGCGGCCGTCGCCAGTTCCACGGTTCTAAAGAGGTTTTCCTCTCTGATCACTTTGATGTTCAGAGTGCCGACACGATCGAAGGCAAGTGTACGGTTCACAGTTTTAAGAGCTACACGAAACTTGATGCTGTTGGAAACGAAGATTTCTTCTGTCGCTTCGAATACAATTCCGCCACCGGCGCCTTCAATCCTGACAGAGTCGCTGTGTATTGTAAATGTGAGATGCCCTATAACCCTGATGACCTAATGGTCCAGTGTGAAGGCTGCAGTGATTGGTTTCATCCTGCTTGTATAGACATGACGGTGGAGGAAGCCAAAAGACTTGACCACTTCTTTTGTGAAAGTTGTTCTGCCGAAGATCAAAAGAAGTTGCAAAATTCTCATTCTGTCATGAGACACTCAGATACAAAGGTGGATACAAAACGCCGCCGAAGGTGA 651 0.4839 MAKPKATRRTLESYTVKHINKTIRAGDCALMRPSEPSKPSYVARIERIEADSRGANVKVHVRWYYRPEESIGGRRQFHGSKEVFLSDHFDVQSADTIEGKCTVHSFKSYTKLDAVGNEDFFCRFEYNSATGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCSDWFHPACIDMTVEEAKRLDHFFCESCSAEDQKKLQNSHSVMRHSDTKVDTKRRRR 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g2061 216 Gene3D - 1 133 IPR043151 -
Glsi03g2061 216 SUPERFAMILY FYVE/PHD zinc finger 131 194 IPR011011 -
Glsi03g2061 216 ProSitePatterns Zinc finger PHD-type signature. 142 187 IPR019786 -
Glsi03g2061 216 FunFam Bromo-adjacent homology (BAH) domain-containing protein 134 204 - -
Glsi03g2061 216 FunFam Chromatin remodeling protein EBS 1 133 - -
Glsi03g2061 216 ProSiteProfiles BAH domain profile. 21 137 IPR001025 GO:0003682
Glsi03g2061 216 SMART BAH_4 21 137 IPR001025 GO:0003682
Glsi03g2061 216 ProSiteProfiles Zinc finger PHD-type profile. 139 190 IPR019787 -
Glsi03g2061 216 PANTHER OS08G0421900 PROTEIN 5 208 - -
Glsi03g2061 216 SMART PHD_3 141 188 IPR001965 -
Glsi03g2061 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 206 IPR013083 -
Glsi03g2061 216 Pfam BAH domain 22 136 IPR001025 GO:0003682
Glsi03g2061 216 Pfam PHD-finger 141 189 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g2061 Glsi-ChrGlsi03 81569589 81573346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g2061 41 139 Core DNA Replication Machinery Family AT4G14700 29.293 1.89e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Glsi03g2061 BAH 3.6e-21 No_clan