Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g2060 ATGGGAAAGAAGAAGAAAATGAAGGAAAGTGGTGGAAAAGAGCACTACCCCTTGACTGTTTTTGTCTCCAACTTGCCTTACTCCTTCACCAACTCTCAGCTGGAAGAGACGTTCAGTGATGTTGGACCTATCAGGCGTTGTTTCATGGTCATGCAGAAGGGGTCAGCCCAGCATCGTGGTTTTGGTTTTGTTCAATTTGCTGTTGAGGAAGATGCTAAACGCGCTCTTGAGTTGAAGAATGGTTCATCCGTCGGAGGTCGGAAAATTGTAGTAAAGCATGCTATGCCTCGTCCTCCTCGTGAAACACGACAATCTAAGTTAAATCAAGTGGATAAGACAAATGATATCCTGAAGTCAAAAAATGATGACAACGATGGTGGCTTTTCTGGAGCAGAGAAACCTGCTTCAGTTATGAAGGAAGAAGTTTTAAATAAAGAAAAAAGTTCAAGGAAGCCTAAGGAAGTGAGAAAAGCAGCTCTTTGTAGTGATATAGCAGACGAGGGAGGTTGCTCTGAAAAGCAGAGGGTTGCTAGAACTGTTATATTTGGTGGGCTTATTAATTCTGATATGGCTGAAGTTGTTCACAGCCAAGCAAGGGAGATTGGCACTGTGTGTTCTATAAAGTACCCCCTTCCTAGGGAAGAATTTGAGCAACACGGCCTCCTGCAAGATGGCTGTAAATTGGATGCTTCAGCTGTACTTTACACGAGTGTGAAATCAGCACGAGCTTCTGTTGCAATGTTACATCAGAAAGATATAGGAGGAGGAACGGTTTGGGCACGCCAATTGGGTGGAGAGGGCTCCAAGACTCAGAAATGGAAGCTTATTGTCAGGAATCTTCCTTTCAAGGCCAAAGCAAATGAAATTAAAGATATATTTTCATCCGCAGGGTTTGTGTGGGATGTATTTATTCCACACAAGTCAGATACAGGTCTGTCTAAGGGTTTTGCTTTTGTGAAATTCACATGCAAGCAAGATGTGGAAAATGCTATTCAGAAGCTCAATGGATCAATGTTTGGCAAACGGCTCATAGCTGTTGACTGGGCTATTCCAAAGAAGATATATAGCAGTGATGCAAATGCTGCACTTGCTTCAGAAAATGGACTGCAAAAGGTGAGAGATGAAGATGGTAGTAGTACTGAGGACGATTTAGAGGATGATGTTGAGCATATTGGCAAACAGTCCCATAATGGAGATTATAGTGATCCAGATGACTCCAATACTGCTGAGGAAGAAGGTGCTCCTTCTGAAGTTAATTTTGACAAGGAAGCAGACATTGCAAGAAAGGTTCTTAAGAACTTAATCACATCCTCCACCAAAGGAACTTCAGTAAATGATGATTCTATGTTGTCCCAGAAAAACCAGGAGTCAAAATCCGATGGAAATGTTAATGATGCAGATCATAAATCACCTAAGAAGTTAGAAAAGGTTACAAGTGTTTCTAAGCCTGAAATTTTGGGAAGAAGTAAGGTATCAAATCTTAAGCAAACGGAAGAAGAAGAAGAAGATTTGCAGAGAACAGTTTTCATAAGTAATCTTCCCTTTGACTGTGATAATGAAGAAGTGAAGCAACGATTCTTGGGATTTGGGGAAGTGGAATACTTTGTTCCAGTCCTTCATCATGTGACCAAGCGACCGAGAGGAACTGGTTTTCTTAAGTTTAAAGCCCTAGATGCGGCTAATGCTGCAGTTTCAACAGCTAGTGCTGCTTCTGGTTTGGGTATTTTTCTTAAGGGTAGGCCATTAAAGGTTCTGAAGGCTTTAGATAAGAAATCAGCTCATGACAAAGAACTGGAGAAGACCAGAAATGACATTCATGACCATCGCAATCTTTACCTGGCAAAGGAGGGACTAATTCTTGAAGGAACTCCAGCTGCTGAAGGGGTTTCAGACAGTGATATGTTAAAACGCCAGGAGTTGGAAAGGAAGAAGACAACGAAGCTCCAATCGCCAAATTTCCATGTTTCAAGAACTAGACTTGTTATCTACAACTTACCAAAGTCAATGACTGAAAAAGAACTCAAGAAGCTTTGCATTGATGCTGTTACCTCTAGAGCTACCAAGCAAAATCCTGAAATTCGGCAGATAAAGTTCTTGAAGGATGTAAAGAAAGGAAAGGTTGTTACAAAAAACCATTCACGTGGCGTTGCCTTTGTTCAATTTTCAGAGCATCAGCATGCCCTTGTGGCTCTTAGAGTTCTTAATAATAATCCAGAAACTTTTGGTCCTGAACATCGGCCAATCGTGGAGTTTGCTGTTGATAATGTTCAAACACTGAAACTACGAAAAGCCAAGCTACAATATCAGCATCAGGCTACTCATGATGACAGCCATGTCAAGGAAAATGAGGAACCTCAATCAGGTGTCCACACCCATAAAAAGGACAGAAAACGAAAATCTCGAGATAAGGGAAAGCCAGTTAAGGAATCGGTGCTCAATAAAGAAGATGAACCAGGAAGTACAGTGCCAAATGAAAACGCCACCGAAGGACGCAATTCTAAAAGACAGAAAGGCAAGCATAAAAGTAGAAAGGCAGATGAGTTATCACTTAAAGAAAAGTCAGAAGCATTGTCCATGAAGCCAAAGAAGTACCAAGACGGCCAGAATGGTGGTGGTAGAACATCACTTCAAGATCATAACACTGCTATCGACGCCAACAAAACAAAATATGGTAAAAAAGTAGATCTTGGATTGAAGAAGAGGAAGTTGCTGAATGAAGCAGAAGCGGGGGGGGAAATTTCAAAGAAACGGTCAAAAAAGAATAAAGATCCTGTAGGGAAAGATGTGGTAGATAAGCTTGACATGCTTATTGAACAATATAGATCCAAGTTCTCACAGCAGGGTTTGCAAGGGAATGATGGTGAGAAAAGACCTTCCAAACAGCTCAGGAAATGGTTCGAATCATAA 2907 0.4128 MGKKKKMKESGGKEHYPLTVFVSNLPYSFTNSQLEETFSDVGPIRRCFMVMQKGSAQHRGFGFVQFAVEEDAKRALELKNGSSVGGRKIVVKHAMPRPPRETRQSKLNQVDKTNDILKSKNDDNDGGFSGAEKPASVMKEEVLNKEKSSRKPKEVRKAALCSDIADEGGCSEKQRVARTVIFGGLINSDMAEVVHSQAREIGTVCSIKYPLPREEFEQHGLLQDGCKLDASAVLYTSVKSARASVAMLHQKDIGGGTVWARQLGGEGSKTQKWKLIVRNLPFKAKANEIKDIFSSAGFVWDVFIPHKSDTGLSKGFAFVKFTCKQDVENAIQKLNGSMFGKRLIAVDWAIPKKIYSSDANAALASENGLQKVRDEDGSSTEDDLEDDVEHIGKQSHNGDYSDPDDSNTAEEEGAPSEVNFDKEADIARKVLKNLITSSTKGTSVNDDSMLSQKNQESKSDGNVNDADHKSPKKLEKVTSVSKPEILGRSKVSNLKQTEEEEEDLQRTVFISNLPFDCDNEEVKQRFLGFGEVEYFVPVLHHVTKRPRGTGFLKFKALDAANAAVSTASAASGLGIFLKGRPLKVLKALDKKSAHDKELEKTRNDIHDHRNLYLAKEGLILEGTPAAEGVSDSDMLKRQELERKKTTKLQSPNFHVSRTRLVIYNLPKSMTEKELKKLCIDAVTSRATKQNPEIRQIKFLKDVKKGKVVTKNHSRGVAFVQFSEHQHALVALRVLNNNPETFGPEHRPIVEFAVDNVQTLKLRKAKLQYQHQATHDDSHVKENEEPQSGVHTHKKDRKRKSRDKGKPVKESVLNKEDEPGSTVPNENATEGRNSKRQKGKHKSRKADELSLKEKSEALSMKPKKYQDGQNGGGRTSLQDHNTAIDANKTKYGKKVDLGLKKRKLLNEAEAGGEISKKRSKKNKDPVGKDVVDKLDMLIEQYRSKFSQQGLQGNDGEKRPSKQLRKWFES 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g2060 968 Gene3D - 492 597 IPR012677 -
Glsi03g2060 968 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 658 766 IPR000504 GO:0003723
Glsi03g2060 968 MobiDBLite consensus disorder prediction 768 791 - -
Glsi03g2060 968 SUPERFAMILY RNA-binding domain, RBD 269 354 IPR035979 GO:0003676
Glsi03g2060 968 SUPERFAMILY RNA-binding domain, RBD 499 592 IPR035979 GO:0003676
Glsi03g2060 968 PANTHER RNA-BINDING MOTIF PROTEIN 14B 17 968 - -
Glsi03g2060 968 MobiDBLite consensus disorder prediction 943 968 - -
Glsi03g2060 968 SMART rrm1_1 19 92 IPR000504 GO:0003723
Glsi03g2060 968 SMART rrm1_1 659 750 IPR000504 GO:0003723
Glsi03g2060 968 SMART rrm1_1 274 347 IPR000504 GO:0003723
Glsi03g2060 968 SMART rrm1_1 507 585 IPR000504 GO:0003723
Glsi03g2060 968 CDD RRM1_RBM28_like 19 97 - -
Glsi03g2060 968 MobiDBLite consensus disorder prediction 901 928 - -
Glsi03g2060 968 MobiDBLite consensus disorder prediction 842 860 - -
Glsi03g2060 968 MobiDBLite consensus disorder prediction 767 884 - -
Glsi03g2060 968 MobiDBLite consensus disorder prediction 439 481 - -
Glsi03g2060 968 SUPERFAMILY RNA-binding domain, RBD 18 259 IPR035979 GO:0003676
Glsi03g2060 968 MobiDBLite consensus disorder prediction 96 150 - -
Glsi03g2060 968 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 96 IPR000504 GO:0003723
Glsi03g2060 968 Gene3D - 657 752 IPR012677 -
Glsi03g2060 968 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 506 589 IPR000504 GO:0003723
Glsi03g2060 968 CDD RRM4_RBM28_like 658 755 - -
Glsi03g2060 968 SUPERFAMILY RNA-binding domain, RBD 649 757 IPR035979 GO:0003676
Glsi03g2060 968 MobiDBLite consensus disorder prediction 460 479 - -
Glsi03g2060 968 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 273 351 IPR000504 GO:0003723
Glsi03g2060 968 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 275 344 IPR000504 GO:0003723
Glsi03g2060 968 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 89 IPR000504 GO:0003723
Glsi03g2060 968 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 508 566 IPR000504 GO:0003723
Glsi03g2060 968 Gene3D - 260 383 IPR012677 -
Glsi03g2060 968 MobiDBLite consensus disorder prediction 439 459 - -
Glsi03g2060 968 MobiDBLite consensus disorder prediction 391 421 - -
Glsi03g2060 968 MobiDBLite consensus disorder prediction 868 884 - -
Glsi03g2060 968 MobiDBLite consensus disorder prediction 96 127 - -
Glsi03g2060 968 FunFam RNA-binding motif protein 28 657 752 - -
Glsi03g2060 968 Gene3D - 2 109 IPR012677 -
Glsi03g2060 968 CDD RRM2_RBM28_like 274 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g2060 Glsi-ChrGlsi03 81558686 81568218 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g2060 19 98 Eukaryotic Initiation Factors Gene Family AT3G11400 35.000 7.75e-08 53.5