Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g2059 ATGGCAACTTATTTGCCTAATTCATATTCTGAGACACCGATTACTCCTAGTAACATAAGGTTGTTTATGAACTCTGGTTCATATTCAAATGCATTTTCTGGCAATTCTCAGGAGCAAAATAACTGCTTTGTGATCCCTTCAATAAGTTCTTCACATTCAACTCCTGACCAGCGAGAAATCTTAACAAATATTGGTGGGTTACAAACTGGGGACCATGATTTCACTGCTTGGAGAGAGGGTAGAAATGAGATGCTAGTCACACATCCAATGGATGGACAGAATTTGCGGGGTCAGGCATTATCTCTCAGCCTTGGAACCCAAATACCATCAGGAATCCAAATGCCTCCTTTCCATGATCGAAGTACTAATCCGAGTTTTGATTCGTTTTTAGGTCCAAATCCATCGATTTTAGGCAATGGGGGCCATAGAAGTGGCTCTTCTAGGCAGGAATGTCTGAGGCACTCTGAATTTTTGCAATCTGATTTACCTGAAGGTAATCAAGAATTAAATAGAGAGGATTATTCTTTGCATGGAATGCTGAATGTTGCAAGCAATGGTCCCAATTCCAAATACTTCAAGGCTGCTCAACAGCTACTTGATGAAGTTGTTGACATCCAGAAAGCTATAATCAAACGACCTAATGTGAAAAGTCATAGCACACATGAAAACTCCAAGAAGACTCCCAAGGAGGATGGGGAGAGACTGGAAAATGAAAGGGCAACTGCAAGTAACCCTCAAGATTCAGCTAGTAACTCCTCTTGTGAGCTTTCACTTGCTGAAAAACAAGATCTGCAGCACAAGTTAACAAAGCTTCTATCAATACTGGATGAGGTTGAAAGTAGGTACAAACAATATTATCATCAGATGAAAATTGTGGTATCATCATTTGATGTGATAGCAGGATGCGGGGCAGCTAAACCATACACAGCACTTGCACTCCAAACCATTTCGCGCCATTTTCGGTGTTTGCGTGATGCAATCACTGGCCAAATCGGTGCAACACAGAAGAGCCTTGGAGAGCAAGATACTTCAGGGAATAATAAAGGAGCTGTAATATCAAGACTCCGGCATGTGGACCAACAAATCCGGCAACAGAGGGCTCTCCAGCAGCTTGGTGTGATGCAACATGCATGGCGGCCACAGAGGGGACTGCCAGAAAGCTCTGTTTCAATTCTTCGTGCTTGGCTGTTTGAGCATTTCCTTAATCCCTACCCAAAGGATTCTGATAAGATCATGCTAGCAAGGCAGACAGGCTTGACTAGAAGTCAGGTCTCAAATTGGTTTATAAATGCACGAGTGCGTCTATGGAAACCTATGATTGAGGAGATGTACAAAGAAGAGATTGGTGATGCTGACACTGACTCCAGTTCTTCATCTGAAAATGCATCCAAGGTAACAAAAAGTGATGTCAAGACCTCTGATGACAGGTTTGATGATTTGCAGCAGAGTCAAATTTCGAACAAGAACTCCAATGGTGGACAAGCTAAGAACTTCAGATCCGATAATGTTCTTGATACAGAAATAATGGGAATCACTGGAATAGCTAGTCTTCATCATGGAGGTCGTGAGGGTGAAACTGAATATGGGATAGTAAAGCAAACTGGGGAGCAAAGGCCCAACTTTGATGATTGTAGTCTCTTCCCAGATGACACGGTTGTTCAGTCTGGTGGAGGTAGTGGCGGGTTTATGGTGGTTGCTTCCACATGCCAAACGCCAGAGTTGGGGAGGTTTGAGACAAGAAATGGAGTATCACTGACATTAGGTTTACAGCATTGTGAGGGTGGAAATTTTATGCCTGGTGAGACTCATCATGGATTTGTTGTCATGAGGGAGGATGGCATCTACAATGCTGCTGCTGCAGAAGCTTCTACAATTGGAGCTGGGACAGCAGACCTTGAGTCCGTGAGTCCTGGAAACCAGCAGCAAAGGTTCAGTTCACCGCATTTATTACATGATTTTGTAGTCTAA 1968 0.4324 MATYLPNSYSETPITPSNIRLFMNSGSYSNAFSGNSQEQNNCFVIPSISSSHSTPDQREILTNIGGLQTGDHDFTAWREGRNEMLVTHPMDGQNLRGQALSLSLGTQIPSGIQMPPFHDRSTNPSFDSFLGPNPSILGNGGHRSGSSRQECLRHSEFLQSDLPEGNQELNREDYSLHGMLNVASNGPNSKYFKAAQQLLDEVVDIQKAIIKRPNVKSHSTHENSKKTPKEDGERLENERATASNPQDSASNSSCELSLAEKQDLQHKLTKLLSILDEVESRYKQYYHQMKIVVSSFDVIAGCGAAKPYTALALQTISRHFRCLRDAITGQIGATQKSLGEQDTSGNNKGAVISRLRHVDQQIRQQRALQQLGVMQHAWRPQRGLPESSVSILRAWLFEHFLNPYPKDSDKIMLARQTGLTRSQVSNWFINARVRLWKPMIEEMYKEEIGDADTDSSSSSENASKVTKSDVKTSDDRFDDLQQSQISNKNSNGGQAKNFRSDNVLDTEIMGITGIASLHHGGREGETEYGIVKQTGEQRPNFDDCSLFPDDTVVQSGGGSGGFMVVASTCQTPELGRFETRNGVSLTLGLQHCEGGNFMPGETHHGFVVMREDGIYNAAAAEASTIGAGTADLESVSPGNQQQRFSSPHLLHDFVV 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g2059 655 CDD homeodomain 378 439 IPR001356 GO:0003677
Glsi03g2059 655 Gene3D - 374 453 - -
Glsi03g2059 655 MobiDBLite consensus disorder prediction 213 256 - -
Glsi03g2059 655 MobiDBLite consensus disorder prediction 448 475 - -
Glsi03g2059 655 SMART prehox3 180 329 IPR006563 -
Glsi03g2059 655 Pfam Associated with HOX 188 328 IPR006563 -
Glsi03g2059 655 MobiDBLite consensus disorder prediction 215 240 - -
Glsi03g2059 655 Pfam Homeobox KN domain 395 434 IPR008422 GO:0003677|GO:0006355
Glsi03g2059 655 ProSiteProfiles 'Homeobox' domain profile. 375 438 IPR001356 GO:0003677
Glsi03g2059 655 Coils Coil 261 281 - -
Glsi03g2059 655 MobiDBLite consensus disorder prediction 241 256 - -
Glsi03g2059 655 SUPERFAMILY Homeodomain-like 379 445 IPR009057 -
Glsi03g2059 655 SMART HOX_1 378 442 IPR001356 GO:0003677
Glsi03g2059 655 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 103 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g2059 Glsi-ChrGlsi03 81550078 81553274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g2059 8 655 Homeobox Transcription Factor Family AT4G34610 40.422 4.90e-129 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Glsi03g2059 POX 4e-48 No_clan