Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g2058 ATGGAGTCAACCGTTGGTATACTAGCAGCTAAGCGCCCTTCAAGCGGGTTTAATCCAGAGGAACACAAAAGACTGAAACTATCGAGTTATAGCACGCCATACTCAGCACATACATGTGATAAAATTGAACTAAAGTCTCCTAAGAATTCTTCAAATGTTGTGGATTATAGCAATCCATATGCTATTGCTGACTTGCTGGATGGTTTAAACTGTGGTAAATTTGGAAGTGTCACAAAGGAAGTAGAGGCCCTTGTAACCCGAAAAATGCAAACACTGAGCCCTTACTTTGCAAAATATCCCACACTTCTAAATCAATTGTTGGAAGTGGGAATGAACCGCAATGAAGAAACAAAAGCTGATGGTTTGGCACATCAAAACATCATAGATTTGGAGGAGGAGCACATTGCCAAGGATGCTCCAAAAGCATCTTTGTCTGTTGTAATTATTGATTCAGATGAGGAAGATGATAGAGATCGAAAACCTTATCTTCCATTTCAACAAGTTGTGCTGCCAAAACCTGCTGGACTGTCTCCCACAAAGGACATAGTTGAGTACCATGCTCCCATTGCGTACCATCCTCCCATTGGCTATCATGCTGGAAGTGTTGATGTAAAACGTGAAAAATGTCTGGTTGGTAAAGGTGTTTATGTTGGTGTACAAGAGGAAGATGATCATCCGGATGATATGAAGGATGATGGCCTAGAAGATATTTGGAGGGAGATGTCAATGGCCATAGAATGTTCCAAGGATGTTGCCGTGAATCCTCTTCCTGATGAAGAAACAAAAAAAGGTGGGGAGGATTGTGATCACTCTTTTGTTTTAAAAGATGATCTCGGTTATGTTTGTCGCGTTTGTGGGGTTATTGACAGAGGTATTGAAACCATATTTGAATTCCAGTACAAGGTTAAAAGGAGTATAAGAACTTACATGCCTGATTCATGGAATGCCAAAGAGAGAGCAACACCTGAGGTATCTGGACTTAAATTTTCTGAAGATGGTCTGGTGATAACTGAAATCTCTGCCCACCCTAGGCATATGAAACAAATGAAACCACATCAAGTCGAAGGATTTAATTTTCTTGTCAGAAACCTTGTGGGTGACAATCCTGGAGGCTGTATCTTGGCCCATGCTCCAGGATCTGGGAAGACATTCATGATAATCAGTTTCATGCAAAGTTTTTTGGGCAAGTATCCTAATGCTAGACCTCTTGTAGTGCTTCCTAAGGGGATATTGGCCACTTGGAAAAAGGAGTTTCAAACGTGGCAAGTGGAGGACATACCACTCTATGATTTTTACACTTTAAAGGCAGACAGCCGATTTCAGCAACTGGAAGTGTTAAAACAGTGGGTGGAGCAGAAGAGTATTCTTTTCTTAGGATACAAACAATTCTCTTCAATTGTCTGTGATAGTGGGACTAACAACATATCAATGTCTTGCCAAGAGATATTGCTTAAGGCTCCTTCAATTCTAATTTTAGATGAGGGACACACTCCTAGGAATGACAATACTGACATGGTGCAGTCCCTTGCCAAGGTACAAACTCCTAGAAAAGTTGTACTGTCAGGAAGCCTATATCAAAATCATGTCAAAGAGGTATTCAACATCTTAAATCTTGTGCGGCCAAAGTTTTTACGTTCTGAAACATCTCGACCTATTGTCAAGCGCATTATGAGTAGAGTACATGTACCAGGTGTGAGAAAATTCTTTGACTTGGTTGAGAACACTTTGCAGAAGGATACTGATTTTAAAAGGAAAGTGGCCGTCATTCAAGATTTGCGGGAGATGACGAGCAAAGTACTTCATTACTATAAAGGAGATTTTCTTGATGAGCTTCCTGGACTTGCAGATTTTACTGTTGTACTCAATCTTACCCCTCGACAGAAGCATGAAACTCAAAAATTAAAGAAGTTATCCAGAAAGTTTAAGATATGTTCTGTAGGGAGTGCTGTTTATCTTCACCCTAAATTAAAACCTATGGCAGAAAAATGTTCTGACAATTGTGCTGTCTCTGATTATACGATGGATGAAAAAATAGAGAGTCTAGATGTGGAAGATGGAGTGAAGTCAAAATTCTTTCTTAATATGCTGAACCTATGTGATTCAGGTGGGGAGAAGCTTCTAGTTTTTAGCCAATATCTCTTACCTTTGAAGTATTTAGAAAGATTAGCTGTGAAAAGGAAGGGATGGTGTCCTGGAAGAGAAATCTTTGTCATCTCAGGAGAATCTAGCTCTGAACAAAGGGAGAGGTCCATGGAACGGTTTAACAATTCTTCAGATGCCAAAGTCTTCTTTGGCTCGATCAAGGCATGTGGAGAAGGCATATCTTTGGTTGGGGCTTCACGCATAATTATTTTGGATGTTCATCTAAATCCTTCAGTTACTCGCCAAGCAATTGGCCGTGCATTCCGACCAGGACAGACAAAGAAAGTCTTTGCATATCGGTTGGTAGCTGCCGATTCTCCTGAAGAGGAAGATCACAATACTTGTTTCAAGAAGGAATTAATTTCTAAAATGTGGTTTGAATGGAATGAGTATTGTGGTTATCGTGATTTCAAAGTTGAGACAGTTGATGTGAAAGAATGTGGTGATCTCTTTCTAGAAAGTCCATTGTTAGGGAAAGATGTTAAAGTTCTGTATAAAAGGTAA 2646 0.3991 MESTVGILAAKRPSSGFNPEEHKRLKLSSYSTPYSAHTCDKIELKSPKNSSNVVDYSNPYAIADLLDGLNCGKFGSVTKEVEALVTRKMQTLSPYFAKYPTLLNQLLEVGMNRNEETKADGLAHQNIIDLEEEHIAKDAPKASLSVVIIDSDEEDDRDRKPYLPFQQVVLPKPAGLSPTKDIVEYHAPIAYHPPIGYHAGSVDVKREKCLVGKGVYVGVQEEDDHPDDMKDDGLEDIWREMSMAIECSKDVAVNPLPDEETKKGGEDCDHSFVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKRSIRTYMPDSWNAKERATPEVSGLKFSEDGLVITEISAHPRHMKQMKPHQVEGFNFLVRNLVGDNPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILATWKKEFQTWQVEDIPLYDFYTLKADSRFQQLEVLKQWVEQKSILFLGYKQFSSIVCDSGTNNISMSCQEILLKAPSILILDEGHTPRNDNTDMVQSLAKVQTPRKVVLSGSLYQNHVKEVFNILNLVRPKFLRSETSRPIVKRIMSRVHVPGVRKFFDLVENTLQKDTDFKRKVAVIQDLREMTSKVLHYYKGDFLDELPGLADFTVVLNLTPRQKHETQKLKKLSRKFKICSVGSAVYLHPKLKPMAEKCSDNCAVSDYTMDEKIESLDVEDGVKSKFFLNMLNLCDSGGEKLLVFSQYLLPLKYLERLAVKRKGWCPGREIFVISGESSSEQRERSMERFNNSSDAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQTKKVFAYRLVAADSPEEEDHNTCFKKELISKMWFEWNEYCGYRDFKVETVDVKECGDLFLESPLLGKDVKVLYKR 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g2058 881 Pfam SNF2-related domain 369 627 IPR000330 GO:0005524|GO:0140658
Glsi03g2058 881 CDD SF2_C_SNF 676 816 - -
Glsi03g2058 881 SMART helicmild6 717 805 IPR001650 -
Glsi03g2058 881 Gene3D - 320 561 IPR038718 -
Glsi03g2058 881 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 363 542 IPR014001 -
Glsi03g2058 881 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 332 556 IPR027417 -
Glsi03g2058 881 Gene3D - 612 866 IPR027417 -
Glsi03g2058 881 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 221 880 IPR044567 GO:0080188
Glsi03g2058 881 Pfam Helicase conserved C-terminal domain 699 804 IPR001650 -
Glsi03g2058 881 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 487 843 IPR027417 -
Glsi03g2058 881 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 691 859 IPR001650 -
Glsi03g2058 881 SMART ultradead3 345 553 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g2058 Glsi-ChrGlsi03 81540691 81547660 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g2058 702 833 RAD5 or RAD16-like Gene Family AT5G43530 33.333 4.81e-15 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Glsi03g2058 SNF2_N 8.7e-19 CL0023