Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g2024 ATGGTTGATCTCAACATATATACTGCTGTTTTTAACAAGGAAGAGGATATTTCCACCTATACTATCAAAGCTGCTGACGATCCAAGAACCTTGAACAAGATTCTGTACATTAAACCCCTGGCCAATACCTACTCATTTAATGAGCTAGTATCTCTGTGGGAGAAGAAGATTGTACTTCGGTTGTTGCAGAATCCTCGCCTCCCCATGTTGGGATACTATCAATTGGACACTCCAGTGTTTGTGAAGGGAGACCAGAGTAACTTTGAAATAGAGCCATCTTTTGGAGTAGAAGCTTCAGCTCTTTATCCCGATGTCAAATGCCTTGTGCGTATCTATAAATTAGAGCGGCCCCAGGGCGTGGAATCAGATCAACGCATTCTCATTCTCTTTTCTGCAAAACGGAAGAAGCCGAGAATGGCTGCAATACTTGAACTTTCTGGTCAGGTCCCGAATGCTCGACCTCAAATACTGCAACTGCTGGGTCTGAATGCTCTGGGAGAAGAGATTGTAGCAGATCGTGACCTTGTTTGGTTGGAATACGAGGACGACTACGAAGAGATTGAGATAAATCCGAATGGTTCTTGGTTGGAATACGTGGACGAGGAGGAGGAGGACGATGATGGTGAGGAATGGAGGGTAAGAGGTGCGAGTGAGAAGTCATTAGAAAAGTTAGAAAGGGTGAGAATAGAAGGAGGATCGAGAGAGTGTTCGATATGTTTGGAAGAGATACCAAATGGGGTGGAGGTGATTCGAATGCCAAAGCCTTGCTTTCATGTGTATCATCAACATTGCATCCTGGAGTGGCTCACCAAGTCTAATACCTGCCCTTTGTGTCGCTACCAAATCCCCTCTTGA 855 0.4491 MVDLNIYTAVFNKEEDISTYTIKAADDPRTLNKILYIKPLANTYSFNELVSLWEKKIVLRLLQNPRLPMLGYYQLDTPVFVKGDQSNFEIEPSFGVEASALYPDVKCLVRIYKLERPQGVESDQRILILFSAKRKKPRMAAILELSGQVPNARPQILQLLGLNALGEEIVADRDLVWLEYEDDYEEIEINPNGSWLEYVDEEEEDDDGEEWRVRGASEKSLEKLERVRIEGGSRECSICLEEIPNGVEVIRMPKPCFHVYHQHCILEWLTKSNTCPLCRYQIPS 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g2024 284 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 284 IPR013083 -
Glsi03g2024 284 Gene3D - 8 107 - -
Glsi03g2024 284 ProSiteProfiles Zinc finger RING-type profile. 236 279 IPR001841 -
Glsi03g2024 284 Gene3D - 16 104 - -
Glsi03g2024 284 Pfam NmrA-like family 9 57 IPR008030 -
Glsi03g2024 284 SUPERFAMILY RING/U-box 235 282 - -
Glsi03g2024 284 SMART ring_2 236 278 IPR001841 -
Glsi03g2024 284 Pfam Ring finger domain 235 279 IPR001841 -
Glsi03g2024 284 CDD RING-H2_PA-TM-RING 235 279 - -
Glsi03g2024 284 PANTHER PINORESINOL REDUCTASE-RELATED 8 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g2024 Glsi-ChrGlsi03 81360172 81362579 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g2024 231 284 C3H Transcription Factor Family AT5G02750 51.852 5.37e-13 65.9