Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g2021 ATGAAGTGGCAACAAGAGCAACAAGAACAGCATCAAAACCAGGGCTTCTATTGTGGAACTGGCTTTCACGCTGCGGTCTCTTCTCTGCAAGTTCATAATTCTCAGGAGATGATGATGATTGAGGGTGGTGATTCTGCACTTGCTGAGATGCTCGCTCAGTCAATGAAGTCTGACCCCAGATTGGAAAATGGGTGGCCCGAATTGGGGAAGTACGAGATGCCCAGTATGGGATTTGGGTCTTCTGGGTTTGATGTGAATTCTGTAATTTCAAGGACTTCTAACTGCCCAAACACTGTGCCGGCGACAGCGGTTGCCGATGCCAAAGTCAGAGTCTCAGTTTCGGGGAAGGAGAAGATGAGCTCGGCAAGTGGGAAAGAGAGCTTCAAGAAGAGAAAAGCTGACAAGGTTCAGAACTCCAAGGTTGTTGTTGCAGAAAATGATAACAAAGACAAGAGGATCAAAGTAAGGGCAGAGGAAGGGGAATCCAAAGCCACAGAGCAAAATAGCACCAAGAATACCACAGCGACCACAAACAACAACAACGGAGAAACTTCTGCAGGTACTTCAAAAGAAAATTCAAAGGTGTCCGAGGTTCAGAAGCCTGACTACATTCATGTCCGAGCGCGTCGTGGCCAAGCCACTGACAGCCATAGCCTAGCTGAAAGAGTTAGAAGGGAGAAAATCAGCGAGAGAATGAAGTATTTGCAAGATTTAGTACCGGGTTGCAACAAAATTACAGGAAAAGCTGGAATGCTTGATGAGATCATCAACTATGTTCAGTCTCTTCAACGACAAGTAGAGTTCTTGTCAATGAAACTGGCTACTGTAAACCCAAGGCTCGACTTCAACGTTGATGATCTGTTCACCAAAGAGATGTTTGCTGCTTTTGCTCCAAGTTTTCCAACCAGTGGGATACCACTAGACATGAACAACCCTGGCTATCTTCAGTTCAATTGTGGGATAGACATGGGAATAAACCCTCCAGATATTGGGCTTAGAAGGAGCATTAGTGCCCCTGTATCGATGCCTGAAACGTTTCTCGACTCATGCTGTTTCAATCAGCAAATTTTACCCTCCTGCACTTGGGAATCTGATTTGCATAACCTTTCCAACGTGGCTTTTGATGAAGCAAGAATAACATCCTTTGCCTCTCAGCCATTCACAGGTTTAGTTGAAGGTAGCAATCTAAAGATGGAGATGTAA 1203 0.4522 MKWQQEQQEQHQNQGFYCGTGFHAAVSSLQVHNSQEMMMIEGGDSALAEMLAQSMKSDPRLENGWPELGKYEMPSMGFGSSGFDVNSVISRTSNCPNTVPATAVADAKVRVSVSGKEKMSSASGKESFKKRKADKVQNSKVVVAENDNKDKRIKVRAEEGESKATEQNSTKNTTATTNNNNGETSAGTSKENSKVSEVQKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNVDDLFTKEMFAAFAPSFPTSGIPLDMNNPGYLQFNCGIDMGINPPDIGLRRSISAPVSMPETFLDSCCFNQQILPSCTWESDLHNLSNVAFDEARITSFASQPFTGLVEGSNLKMEM 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g2021 400 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 212 262 IPR011598 GO:0046983
Glsi03g2021 400 Pfam Helix-loop-helix DNA-binding domain 216 263 IPR011598 GO:0046983
Glsi03g2021 400 CDD bHLH_AtBPE_like 202 287 - -
Glsi03g2021 400 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 120 308 IPR024097 GO:0006355
Glsi03g2021 400 FunFam Basic helix-loop-helix transcription factor 209 281 - -
Glsi03g2021 400 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 210 281 IPR036638 GO:0046983
Glsi03g2021 400 SMART finulus 218 268 IPR011598 GO:0046983
Glsi03g2021 400 MobiDBLite consensus disorder prediction 122 165 - -
Glsi03g2021 400 MobiDBLite consensus disorder prediction 166 194 - -
Glsi03g2021 400 Gene3D - 209 282 IPR036638 GO:0046983
Glsi03g2021 400 MobiDBLite consensus disorder prediction 111 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g2021 Glsi-ChrGlsi03 81345375 81347296 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g2021 71 369 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 44.860 3.13e-63 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi03g2021 HLH 2.2e-06 No_clan