Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g2016 ATGGCTTCTGCAGAAGTTGAATTCCGATGCTTTGTTGGTGGGCTCGCATGGGCCACCGATAACGAGGCCTTAGAGAAGGCCTTCTCTCCCTTCGGCGAGATCATCGAATCGAAGGTTATCAACGATCGCGAGACTGGGAGGTCGAGAGGGTTCGGATTCGTAACCTTCTCCTCTGAACAGGCCATGAGGGATGCGATCGAGGGGATGAATGGTCAGGACCTCGACGGCCGTAATATTACTGTGAACGAGGCTCAGTCCCGTGGAAGAGGAGGCGGCGGTGGCGGGGGCTTCGGAAGTGGTGGTGGTGGCGGTTACGGTGGTGGCGGCGGCGGTTACAGCCGTGGGGGAGGCGGCTACGGCGGTGGAGGACGTCGTGATGGTGGATATAGCCGTAATGGTGGTGGCGGCGGATACGGAGGTGGAGGCTATGGAGGTGGCGGTGGTTACGGAGGAGGATATGGTGGTGGACGTGACCGTGGATACGGTGATGGTGGAGCTCGTTACTCCAGGGGTGGCGGTGCTTCTGAAGGAAGCTGGAGAAACTAA 546 0.5934 MASAEVEFRCFVGGLAWATDNEALEKAFSPFGEIIESKVINDRETGRSRGFGFVTFSSEQAMRDAIEGMNGQDLDGRNITVNEAQSRGRGGGGGGGFGSGGGGGYGGGGGGYSRGGGGYGGGGRRDGGYSRNGGGGGYGGGGYGGGGGYGGGYGGGRDRGYGDGGARYSRGGGASEGSWRN 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g2016 181 PANTHER GEO13361P1-RELATED 6 165 - -
Glsi03g2016 181 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Glsi03g2016 181 SUPERFAMILY RNA-binding domain, RBD 8 118 IPR035979 GO:0003676
Glsi03g2016 181 Gene3D - 2 120 IPR012677 -
Glsi03g2016 181 SMART rrm1_1 9 82 IPR000504 GO:0003723
Glsi03g2016 181 FunFam Glycine-rich RNA-binding protein GRP1A 2 111 - -
Glsi03g2016 181 MobiDBLite consensus disorder prediction 154 181 - -
Glsi03g2016 181 CDD RRM2_NsCP33_like 9 84 - -
Glsi03g2016 181 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g2016 Glsi-ChrGlsi03 81323916 81324743 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g2016 10 81 Eukaryotic Initiation Factors Gene Family AT2G23350 43.056 9.85e-12 60.8