Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g2015 ATGGTGGATCAGCGAAGCATAGTATCTTTTGGGTTCTTGTTCTTGTTGCTGTTTCAATTCACATTTCAACAGATTGAGCCATTGAGTTCACCCACAGAGCGAGCAGCCTTACTTGAACTTCGATCGTCTTTGGGCTTAAGGAGCAGGGAATGGCCAATAAAGGCCGACCCTTGCTTAATCTGGAATGGTGTGAAGTGCGAAAATGGTCGAGTCCTTGGGATCAATATCTCTGGGTTCAGAAGAACCCGAATTGGGAGGCAAAACCCACAATTTGCTGTCGACGCCTTGGCCAATTTGACGCACTTGCAATCATTCAATGCCTCCAAGTTTCTTCTTTCTGGTCCTATTCCTGATTGGTTTGGCCAACAGCACCCTTCACTTCGAGTGCTTGATCTTCGGTCTTGCTCTATCAATGGCGCTATTCCTTCCAGCCTTGGCAATTTAACCAACCTAACCAGTCTGTATTTATCTGATAATAACCTTACTGGCATAATTCCTAATAGTCTGGGTCAATTGTTTAGCCTTTCGGTTCTTGATCTTTCTCGGAATTCCCTCACTGGATCCGTACCGTCATCCTTTGCCTTTCTTGGGAATCTTTCTTTCCTTGACATTTCTTCCAACTATTTATCCGGGTCGATTCCTCCAGGCATTGGGGCTCTTTCCAAGTTACAATATTTGAATCTTTCCGGCAATGGTCTAACTTCGTCCATACCTGCCCAACTTGGGCATCTTAGTAGCTTATTTGATCTTGATCTAAGCGAGAATTCTTTGTCTGGTGTGGTGCCTCCTGATTTAATTGGGTTGAGGAACTTGCAGAGAATGATACTTGGGAACAACATACTTGATGGACCTTTGCCGGATAACTTGTTTCCTACTTCATCACAGTTGCAGTTCGTTGAGCTGAGACAAAATAACTTTTCTGGGACTTTGCCTGATAATTTGTGGTCTTTGCCGAGATTAAGCTTTCTTGACATCTCTGGCAATAACTTCAGTGGTGTGCTTCCTAATTCTAGTTCTACTGCTAATGCTACTGCTATGGAGCTCAATATTTCTCATAATCTCTTTTATGGAGGCCTCACTCCTCTGCTCCAAAGGTTCAGTTTCATTGATCTGTCAAGCAATTATCTTGAGGGCAAGGTTCTGGATTTCGTGCTTAATGCATCTCTAGATAGCAACTGCCTCCAAAACGTATCAAATCAGAGGACAACAGTAGAATGTGCATCATTCTATTCTGAGAGGGGCCTCACTTTTGATAATTTTGGACGCTCAAATCCCTCTGGACCTCCTGCATCAGAAAGCTCTGGGAAGAGCAACAGAAAAAAGATTATATTAGCAGGAGTCCTGGGTGGAGTGGGTTTAATTGCACTTTCGGCGGTGTTACTGGTGTTGTTGCTTCTTTGTGCTCGTAAGAGGGGTAATTCAAACAAAACAGGAGTAGGTGTGGGCCCTGCTCCTCCTGGAGGGAGTCTTCCACCACCTGATGTATCAATCAACTTTTCAAAAGTTGGAGACTCATTTTCGTATCAGGATTTGCTCAAGGCCACAGGTGATTTCAGTGATGCAAATCTTATCAAACATGGGCATACCGGGGATCTCTTCAGTGGTGTTCTCGAAAGTGGGATTCCTGTGGTCATAAAAAGGATTGGCATGCGTTCAACGGAAAACGATGCTTACATGTTGGAATTGGATTTTTTCAGTAAGGTTTCTCATACAAGAATAGTTCCCCTGTTGGGACATTGTTTAGAAAATGAGAATGAGAAGTTCCTGGTTTATAAACATATGTCAAATGGGGACTTGTTGAATTGCTTGTACAACCGAAAAACTACATCTGAAGATGGTAAGTTGCTGTCGTTGGATTGGATAACAAGGTTAAAAATTGCTATTGGAGCAGCAGAGGCCCTATCTTATCTGCATCATGAATGCTATCCACCCTTTGTTCACAGAGATATTCAAGCAAGCAGTATACTTCTAGATGATAAATATGAAGTTCGATTAGGGAGTCTAAGTGAAGCCTGCACTCAAGAAGGGGATACTCATCAAAGCAAAATCACCTGGTTGCTACGGTCCTCTGAACAAGGCACATCTGGTTCATCAACATCAGTTTGTGCCTATGATGTCTATTGCTTTGGGAAAGTATTACTTGAGATGATAACTGGGAAGCTGGGAATTAGTGTATCGAGTGATGCAGAAGTAAAAGAATGGTTGGAACAGACGCTACCTTACATTAGTATTTATGACAAGGAACTTGTGACAAAGATCGTGGATCCGTCTATGGTTGTGGATGAGGATTTCCTAGAGGAAGTGTGGGCAATGGCCATTGTTGCCAGGTCTTGCCTGAATCCAAAACCTTCGAGACGGCCCCAGATGAGATATGTTCTCAAGGCTCTGGAAAACCCTTTAAAAGTTGTAAGGGAAGAAAATTACAGTTCTTCACGGCTTAGAGCAACCTCTTCGAGAGGCTCTTGGAATGCTGCTTTGTTTGGTAGTTGGCGTCAGAGTTCATCAGATGTTACAGTAATTCCAGCAGCCTCTGGTGCAAGAGTAGAAGGAGGAGGGCGTGATTTTTCATCATCTCGGAGACGACATTTAAAGGAGATATTCCCAGAACCATCTAACGTTGAAGAGCCATTCGAATCGTTCCTCGCCATAACTAACGAAATTTTGATATGGCAACTCCGAAGAGCGGTAACTGTTAACTCGCTTCCACTCTTATCCATTGCCATCCCCATCTTCAACATAACAGAGATGCTTTTATGCCAAAAATACCACCTTTACTTTTCATGCTCTCTCCCCCTCCAATCCTTCTGCAACCCAAATTCCACTATCTCCTTCCCTTCCTCCACCATTGTCAACTCCCAAAATCCAAAAGGCCCAGATAACCAGAAGCTTATTCTCCGTAAACAGAACTCCAAATCCACGGCCTTTCTCCTTCATCAACTCTCTTATGCGGAGGATAACTACCATTCCCTGCAATCCAATCCCAAAGCTACTGACCTGCAAGACAATATGCCGGAGGAAGAAAAGATAAAGCTTTTAGAGCTTTCCCTTGTGAGGAAAAGGACCCCTCAGTTTCCTGGGTCCATCTATGTTCAGTCCCCTGGCGATCCTGATGTGGGTTCTTCTTTGCCGCCTCTGCGGACTCTGTTCAAAGAAAAAGCTGACAGTGACGACGACGAGGATATGATAATGCGTGCGCTCGAGATTCGCAGGAAGGTAACGCAAGAGATTTTCAAAGAAGCCATGGGAAAGGGCAAGTTTGGAATCACCTACACTACCAATTTGGTTAATAGATTGCCTGGTTTTATTGATTATATTATGATTGAAGCTGCTTCCATGAAAAGATTGCCACAGTATTCACACACTACGTTCAATTTACGCGCCAAAACTGTTATAGAGGACTCACAAGTTGTGCCCCTTATCAGATGGTTGAAGCATAACTCACTATCATATCATCGGATATCAAAGATCATTTTGATGTCAAGAGGAAACCTTGGTTCTATAAGACGTCTTGTTGAGTGGTTGAAGTCAGTACGTGTGAAAGGAGAATTTATTGGGGTTGCACTTGTGAATGCTGGAGAGAATATTTTGGAACGCAGCAACGAGGAACTTGATGAGATTATTGAATATTTAGAAACCAAGGGAGTCAGGATGGATTGGATGGGTTATGTCGTGAGTCGATGTCCTCAATTGTTGTCTTACAGCTTGGAAGAAGTGAAGACTCGTGTGAATTTCTACCTAGATATGGGATTAAATGAGCATGATTTTGGCACAATGGTTTTTGATTATCCGAAAGTACTTGGCTACTTTACTATGGAAGAAATGAATCAAAAGGTTAATTACTTAAAGGAGTTTGGGCTTAAAAGTGACGATGTTGGCAGATTGCTGGCATTTAAGCCACAATTGATGGGTTGTAGCATAGAGGGAGAATGGAAACCTCTTATTAAGTATTTGTATTATTATGGGATTACCAGAGATGGCATGAGGAGAATGGTTACCCTTAAACCTATGGTTTTTTGTATTGATTTGGAGACAACTATTGTGCCTAAGGTAAAGTTTTTTCAGGACATAGGGATACGAGATGATGCAATTGGCAACATGCTTGTCAAGTTTCCTACCCTACTCACATACAGCCTCCACAAGAAGATTAGGCCAGTGGTCATATTCTTGATGACCAAAGCTGGGGTCAGTGAGAAAGATATTGCCAAGGTTATAGCTATGGGACCAGAGCTCCTGGGATGCAGCATAGTGCATAAGCTTGAAGTAAACGTAAAATATTATCTGTCACTTGGTATACGTCTGAAGCAACTGGGTGAGATGATTGCTGATTTCCCAATGCTGCTCAGATACAACATAGATGTCCTTCGTCCTAAGTATAGTTATTTGCGGAGAACCATGGTTCGGTCTTTGGAAGATCTCATTGAGTTTCCAAGGTTTCTCAGCTATTCTCTTGATGGCCGAATTATTCCAAGGCACAAGGTTCTGGTGGAGAATCAGATTAATTTGAAGCTAAGATACATGCTAGCTTGCACTGATGATCAATTCAAAAAAATGGTCGAGTCTAGAATTAGCAAGCGAAGCAGCTTTCAATCTGCCCTCTTGAATGATGATATTACTAATCCCCAAACATGA 4629 0.426 MVDQRSIVSFGFLFLLLFQFTFQQIEPLSSPTERAALLELRSSLGLRSREWPIKADPCLIWNGVKCENGRVLGINISGFRRTRIGRQNPQFAVDALANLTHLQSFNASKFLLSGPIPDWFGQQHPSLRVLDLRSCSINGAIPSSLGNLTNLTSLYLSDNNLTGIIPNSLGQLFSLSVLDLSRNSLTGSVPSSFAFLGNLSFLDISSNYLSGSIPPGIGALSKLQYLNLSGNGLTSSIPAQLGHLSSLFDLDLSENSLSGVVPPDLIGLRNLQRMILGNNILDGPLPDNLFPTSSQLQFVELRQNNFSGTLPDNLWSLPRLSFLDISGNNFSGVLPNSSSTANATAMELNISHNLFYGGLTPLLQRFSFIDLSSNYLEGKVLDFVLNASLDSNCLQNVSNQRTTVECASFYSERGLTFDNFGRSNPSGPPASESSGKSNRKKIILAGVLGGVGLIALSAVLLVLLLLCARKRGNSNKTGVGVGPAPPGGSLPPPDVSINFSKVGDSFSYQDLLKATGDFSDANLIKHGHTGDLFSGVLESGIPVVIKRIGMRSTENDAYMLELDFFSKVSHTRIVPLLGHCLENENEKFLVYKHMSNGDLLNCLYNRKTTSEDGKLLSLDWITRLKIAIGAAEALSYLHHECYPPFVHRDIQASSILLDDKYEVRLGSLSEACTQEGDTHQSKITWLLRSSEQGTSGSSTSVCAYDVYCFGKVLLEMITGKLGISVSSDAEVKEWLEQTLPYISIYDKELVTKIVDPSMVVDEDFLEEVWAMAIVARSCLNPKPSRRPQMRYVLKALENPLKVVREENYSSSRLRATSSRGSWNAALFGSWRQSSSDVTVIPAASGARVEGGGRDFSSSRRRHLKEIFPEPSNVEEPFESFLAITNEILIWQLRRAVTVNSLPLLSIAIPIFNITEMLLCQKYHLYFSCSLPLQSFCNPNSTISFPSSTIVNSQNPKGPDNQKLILRKQNSKSTAFLLHQLSYAEDNYHSLQSNPKATDLQDNMPEEEKIKLLELSLVRKRTPQFPGSIYVQSPGDPDVGSSLPPLRTLFKEKADSDDDEDMIMRALEIRRKVTQEIFKEAMGKGKFGITYTTNLVNRLPGFIDYIMIEAASMKRLPQYSHTTFNLRAKTVIEDSQVVPLIRWLKHNSLSYHRISKIILMSRGNLGSIRRLVEWLKSVRVKGEFIGVALVNAGENILERSNEELDEIIEYLETKGVRMDWMGYVVSRCPQLLSYSLEEVKTRVNFYLDMGLNEHDFGTMVFDYPKVLGYFTMEEMNQKVNYLKEFGLKSDDVGRLLAFKPQLMGCSIEGEWKPLIKYLYYYGITRDGMRRMVTLKPMVFCIDLETTIVPKVKFFQDIGIRDDAIGNMLVKFPTLLTYSLHKKIRPVVIFLMTKAGVSEKDIAKVIAMGPELLGCSIVHKLEVNVKYYLSLGIRLKQLGEMIADFPMLLRYNIDVLRPKYSYLRRTMVRSLEDLIEFPRFLSYSLDGRIIPRHKVLVENQINLKLRYMLACTDDQFKKMVESRISKRSSFQSALLNDDITNPQT 1542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g2015 1542 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 163 797 - -
Glsi03g2015 1542 FunFam Putative LRR receptor-like serine/threonine-protein kinase 594 816 - -
Glsi03g2015 1542 Gene3D Transferase(Phosphotransferase) domain 1 594 817 - -
Glsi03g2015 1542 SUPERFAMILY RNI-like 94 397 - -
Glsi03g2015 1542 ProSiteProfiles Protein kinase domain profile. 518 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g2015 1542 Gene3D Transcription termination factor 3, mitochondrial 1297 1529 IPR038538 -
Glsi03g2015 1542 FunFam Leucine-rich repeat receptor protein kinase EMS1 190 288 - -
Glsi03g2015 1542 ProSiteProfiles Leucine-rich repeat profile. 150 171 IPR001611 GO:0005515
Glsi03g2015 1542 Gene3D Ribonuclease Inhibitor 192 290 IPR032675 -
Glsi03g2015 1542 Pfam Leucine rich repeat 222 279 IPR001611 GO:0005515
Glsi03g2015 1542 Pfam Leucine rich repeat 149 209 IPR001611 GO:0005515
Glsi03g2015 1542 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g16250 30 189 - -
Glsi03g2015 1542 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g16250 292 422 - -
Glsi03g2015 1542 Gene3D Ribonuclease Inhibitor 291 392 IPR032675 -
Glsi03g2015 1542 SUPERFAMILY Protein kinase-like (PK-like) 496 796 IPR011009 -
Glsi03g2015 1542 Gene3D Ribonuclease Inhibitor 30 191 IPR032675 -
Glsi03g2015 1542 SMART mt_12 1437 1467 IPR003690 GO:0003690|GO:0006355
Glsi03g2015 1542 SMART mt_12 1401 1432 IPR003690 GO:0003690|GO:0006355
Glsi03g2015 1542 SMART mt_12 1364 1396 IPR003690 GO:0003690|GO:0006355
Glsi03g2015 1542 SMART mt_12 1328 1359 IPR003690 GO:0003690|GO:0006355
Glsi03g2015 1542 SMART mt_12 1221 1251 IPR003690 GO:0003690|GO:0006355
Glsi03g2015 1542 SMART mt_12 1292 1323 IPR003690 GO:0003690|GO:0006355
Glsi03g2015 1542 SMART mt_12 1469 1500 IPR003690 GO:0003690|GO:0006355
Glsi03g2015 1542 SMART mt_12 1256 1287 IPR003690 GO:0003690|GO:0006355
Glsi03g2015 1542 Gene3D Phosphorylase Kinase; domain 1 494 593 - -
Glsi03g2015 1542 SMART LRR_typ_2 317 340 IPR003591 -
Glsi03g2015 1542 SMART LRR_typ_2 196 219 IPR003591 -
Glsi03g2015 1542 SMART LRR_typ_2 244 268 IPR003591 -
Glsi03g2015 1542 SMART LRR_typ_2 220 243 IPR003591 -
Glsi03g2015 1542 SMART LRR_typ_2 148 171 IPR003591 -
Glsi03g2015 1542 SMART LRR_typ_2 172 195 IPR003591 -
Glsi03g2015 1542 FunFam Predicted protein 489 593 - -
Glsi03g2015 1542 Pfam mTERF 1152 1344 IPR003690 GO:0003690|GO:0006355
Glsi03g2015 1542 Pfam mTERF 1344 1515 IPR003690 GO:0003690|GO:0006355
Glsi03g2015 1542 Pfam Leucine Rich Repeat 126 148 IPR001611 GO:0005515
Glsi03g2015 1542 Pfam Protein tyrosine and serine/threonine kinase 524 795 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g2015 Glsi-ChrGlsi03 81305019 81313077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g2015 32 688 Miscellaneous Gene Families AT2G16250 58.069 0.0 725
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Glsi03g2015 PK_Tyr_Ser-Thr 1.8e-21 CL0016
TR mTERF Glsi03g2015 PK_Tyr_Ser-Thr 1.8e-21 CL0016