Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g2009 ATGGCCTCCGACAACTCCCCCGGTCGACGCGTTCTCCCTGAACTGGCCAACACGACCCCGTTTCTGGGTTTAAAGCTCTACATCTTGATTGGTATTTCCCTTTTAATCGTAGTAGTGATTGTGCTTCTGATCTTTCTATGCATTCACCGGAGCCGAAACTCGACGAAGCGTAAAATGCGAGTGAAGCACAGTTCCGGTACAATTCCATTGGTCTCCAAGGAGATCATGGAGGTTAAAGCCTTGGATCTCACCCAGGAATGTGAACAACAAGCAGAGCTTAAAATTGAAGATGCTGATCCAAAGAAGATTAAGGTTGAGATTGAGAAAAGGGGGAAGAACAGCGACGAGAGTGACGTGTCCGGTGGTAGCCGCAGTGACGTGTCGGCGGAGGCTCCGAACATTGGGTGGGGCCGCTGGTATAGCTTGAGGGAGCTGGAGGTTGCGACACGTGGGTTCGCCGAAGAGAATGTGATCGGAGAAGGAGGTTATGGGATTGTCTACAGAGGAGTTCTGGAAGATGGGTCTGTGGTGGCCGTGAAGAATCTTCTAAACAACAAGGGTCAAGCGGAGAAGGAATTTAAGGTGGAGGTTGAGGCCATTGGAAAAGTAAGGCATAAGAATTTGGTGGGTTTAGTTGGGTATTGTGCTGAAGGTCCTCGAAGGATGCTTGTTTATGAATATGTTGACAATGGAAATTTGGAGCAGTGGTTACATGGTGATGTAGGGCCTGTTAGCCCCTTGACATGGGATACACGAATGAAGATTGCAATTGGGACAGCAAAAGGGCTAGCCTATTTGCATGAAGGGTTAGAACCCAAAGTTGTGCACCGAGATATAAAATCCAGCAACATTCTTTTGGACAAAAGATGGAACGCCAAAGTGTCAGACTTTGGACTGGCCAAGCTCTTAGGCTCTGAGAAGAGCTATGTGACTACGCGTGTAATGGGAACATTTGGATATGTTTCACCTGAGTATGCAAGCACTGGCATGCTTAATGAGGGCAGTGATGTGTACAGCTTTGGAGTTCTACTCATGGAGATAATTACAGGAAGAAGCCCCATTGATTATTCTAGGCCTCCTGGAGAGATGAATTTGATTGATTGGTTCAAGGCTATGGTAGCAAGTCGCCGTGGAGATGAGCTGGTAGATCCTTTAATTGAGATTGAGCCATCTCCAAGATCTCTGAAGCGAGCTTTGCTGGTTTGTCTGCGCTGTATAGATTTGGATGTCAATAAGCGACCAAAGATGGGTCAAATTGTCCATATGCTTGAGGCAGATGATTTTCCCTTTCGTTCTGAACTTCGTACAATTAGAGAGAGAGATCAAGTTCCTTCACATGCAGCTGTTTCGAGTAAAGTTGCATATCCACCAAAGCACGTTGAGTCCATAGAACAATCGCGGTGGAGGAGACAATTGTAG 1419 0.4672 MASDNSPGRRVLPELANTTPFLGLKLYILIGISLLIVVVIVLLIFLCIHRSRNSTKRKMRVKHSSGTIPLVSKEIMEVKALDLTQECEQQAELKIEDADPKKIKVEIEKRGKNSDESDVSGGSRSDVSAEAPNIGWGRWYSLRELEVATRGFAEENVIGEGGYGIVYRGVLEDGSVVAVKNLLNNKGQAEKEFKVEVEAIGKVRHKNLVGLVGYCAEGPRRMLVYEYVDNGNLEQWLHGDVGPVSPLTWDTRMKIAIGTAKGLAYLHEGLEPKVVHRDIKSSNILLDKRWNAKVSDFGLAKLLGSEKSYVTTRVMGTFGYVSPEYASTGMLNEGSDVYSFGVLLMEIITGRSPIDYSRPPGEMNLIDWFKAMVASRRGDELVDPLIEIEPSPRSLKRALLVCLRCIDLDVNKRPKMGQIVHMLEADDFPFRSELRTIRERDQVPSHAAVSSKVAYPPKHVESIEQSRWRRQL 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g2009 472 PIRSF TyrPK_CSF1-R 10 61 - -
Glsi03g2009 472 PIRSF TyrPK_CSF1-R 242 462 - -
Glsi03g2009 472 PIRSF TyrPK_CSF1-R 157 242 - -
Glsi03g2009 472 FunFam Probable serine/threonine-protein kinase At1g01540 132 227 - -
Glsi03g2009 472 FunFam Putative receptor-like serine/threonine-protein kinase 228 438 - -
Glsi03g2009 472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 274 286 IPR008271 GO:0004672|GO:0006468
Glsi03g2009 472 ProSiteProfiles Protein kinase domain profile. 152 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g2009 472 SUPERFAMILY Protein kinase-like (PK-like) 128 424 IPR011009 -
Glsi03g2009 472 PANTHER OS01G0323000 PROTEIN 14 443 - -
Glsi03g2009 472 Gene3D Phosphorylase Kinase; domain 1 125 227 - -
Glsi03g2009 472 ProSitePatterns Protein kinases ATP-binding region signature. 158 180 IPR017441 GO:0005524
Glsi03g2009 472 CDD STKc_IRAK 158 424 - -
Glsi03g2009 472 Pfam Protein kinase domain 153 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g2009 472 MobiDBLite consensus disorder prediction 107 128 - -
Glsi03g2009 472 SMART serkin_6 152 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g2009 472 Gene3D Transferase(Phosphotransferase) domain 1 228 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g2009 Glsi-ChrGlsi03 81271755 81274903 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g2009 3 419 Trihelix Transcription Factor Family AT1G68690 40.047 2.10e-93 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Glsi03g2009 Pkinase 1.6e-46 CL0016