Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g2003 ATGGCTCCGAATTCGGATTCGGATTCGAATTCCTCACCTTCCCCTGATTCATCTTCATCTGAATCGCCTCCGGCATCACCACCACAATCAAATGACTCATCATCTGGCAATGGCAATAATTCGTCATCTTCCCCTTCCTCATCACCAACACCTTCACCGCCTCGATCTCCTCCTCCTCAGTCGCCTCCGCCACAGTCTCCTCCACCTCAGTCTCCTCCTCCGCAGTCGCCTCCACCTTCATCACCGCCACCATCAGATGATAAAAAATCACCACCACCGCCAGTTGATAACAAATCACCACCGCCATCATCACCCCCACCACCATCTGATCAAAATTCCAGCTCTCCTTCCCCACCTCCACCTTCTAATAATAACAATGGTGGGGACAAGAAATCACCCAGCCCACCGCCGCCGTCTCCTCCGCCACCAGTCCCGTCATCCCCAAATAACCAAGTGTTCTCGCCTCCTCCGCCTGCACAACGTCGATTGTCTCCACCTGGAGCCAATTCAACATCCGGGTCACCTAAGTCATCTTCTGGTTCACCATCACCCGGAAACAATAATAATGGCGGGACCCAATTGAGCGTACCAGTTATAATTGCAGTTGCAGCTGGAGCTGGGATATTTCTCCTTCTCGTTATACTCTTGGTCGCTGTATGTTCAAGGAAGAAGAAAAGATCAGAGGCACCTCCCGTACTTTTTTACACTAATCGTGGCAGCCATGATGACGAGTATTACAAGCGGGCAACAAATGGAAACAACCAGCCTTGGAACAATAATGGTGATCATGTTCTCAATATTCCACCGCCTCCAGGTGGGGGCCAAAAGAATTGGGGAGCACCACCCCCACCACCACCTCCAAATCTGCAAAGTAGTGACATGAGCAACTCTAGTTATTCTGGCCCCCAAGGTCCTGCATTGCCACCCCCACACCCTTCAGTGGCCCTTGGATTCAACAAGAGCACCTTCACGTTTGAAGAGATATCAGCAGCTACTAATGCTTTTTCCCAAGGCAACTTATTGGGTCAAGGTGGTTTCGGCTATGTACACAAAGGAGTGCTGCCCAACGGTAAGGAGATAGCGGTGAAGAGTCTCAAATCCACAGGAGGCCAAGGAGACAAAGAGTTCCAAGCTGAGGTTGATATTATCAGCCGTGTCCATCATCGCCATCTTGTATCACTTGTTGGGTATTGCCTTGCAGAGGGCCAAAAGTTGCTGGTGTATGAATTTGTGCCTAACAAAACCATGGAATACCATCTTCACGGAAAGGGTCGACCTGTCATGGATTGGAGCACTAGGCTCAAAATCGCGATTGGATCAGCCAAAGGACTTGCTTACTTGCATGAGGATTGCCACCCTCGAATCATTCACCGAGACATAAAAGGTGCGAACATTCTCATCGACGACAACTTTGAAGCCAAGGTGGCAGATTTTGGATTGGCAAAGTTTACTCAGGACAACAACACTCACGTTTCTACTCGTGTAATGGGAACATTTGGGTATTTGGCTCCTGAGTATGCTTCAAGTGGTAAGCTAACTGAGAAGTCCGACGTCTTCTCATTCGGTATTATGCTTCTGGAGCTAATAACAGGACGACCTCCCGTGGACACAGCTGGAGACTATGAGGAGGACAGTTTAGTTGACTGGGCTAGGCCTCTATGTATAAGGGCAATGGAAAATGGAAACTTCGATGGATTGGTGGATCTGCGCTTAGAGGACAATTATGATAAGCAGGAGATGGCACGTATGGTTGCTTGTGCTGCTTCCTCTATCAGGCATTCAGCAAGGAGGCGACCGAAAATGAGCCAAATTGTACGTGCACTGGAGGGTGATGTCTCGCTGGATGACCTGAGTCATGAAGGGGTGAAACCTGGCCAAAGTTCAATGTTCAGTAATTCCAGTGTTGAATATGATGCTAGCACGTACAGTGCAGACATGAAGAAGTTCAGAAAGCTAGCATTTGATAGCGGCTGTGCAAGCAGCGATTACGGGGGGACGAGTGATTACGGGCTCAACCCTTCCACCTCAAGCAGTGATCACTCCGCTGAATATCGCAAGAGAGCTCTTTGA 2070 0.4928 MAPNSDSDSNSSPSPDSSSSESPPASPPQSNDSSSGNGNNSSSSPSSSPTPSPPRSPPPQSPPPQSPPPQSPPPQSPPPSSPPPSDDKKSPPPPVDNKSPPPSSPPPPSDQNSSSPSPPPPSNNNNGGDKKSPSPPPPSPPPPVPSSPNNQVFSPPPPAQRRLSPPGANSTSGSPKSSSGSPSPGNNNNGGTQLSVPVIIAVAAGAGIFLLLVILLVAVCSRKKKRSEAPPVLFYTNRGSHDDEYYKRATNGNNQPWNNNGDHVLNIPPPPGGGQKNWGAPPPPPPPNLQSSDMSNSSYSGPQGPALPPPHPSVALGFNKSTFTFEEISAATNAFSQGNLLGQGGFGYVHKGVLPNGKEIAVKSLKSTGGQGDKEFQAEVDIISRVHHRHLVSLVGYCLAEGQKLLVYEFVPNKTMEYHLHGKGRPVMDWSTRLKIAIGSAKGLAYLHEDCHPRIIHRDIKGANILIDDNFEAKVADFGLAKFTQDNNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGIMLLELITGRPPVDTAGDYEEDSLVDWARPLCIRAMENGNFDGLVDLRLEDNYDKQEMARMVACAASSIRHSARRRPKMSQIVRALEGDVSLDDLSHEGVKPGQSSMFSNSSVEYDASTYSADMKKFRKLAFDSGCASSDYGGTSDYGLNPSTSSSDHSAEYRKRAL 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g2003 689 MobiDBLite consensus disorder prediction 274 290 - -
Glsi03g2003 689 FunFam Proline-rich receptor-like protein kinase PERK1 411 619 - -
Glsi03g2003 689 FunFam proline-rich receptor-like protein kinase PERK1 313 410 - -
Glsi03g2003 689 MobiDBLite consensus disorder prediction 47 123 - -
Glsi03g2003 689 CDD STKc_IRAK 341 610 - -
Glsi03g2003 689 Gene3D Phosphorylase Kinase; domain 1 312 410 - -
Glsi03g2003 689 MobiDBLite consensus disorder prediction 665 689 - -
Glsi03g2003 689 MobiDBLite consensus disorder prediction 164 189 - -
Glsi03g2003 689 MobiDBLite consensus disorder prediction 1 189 - -
Glsi03g2003 689 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 205 652 IPR047117 -
Glsi03g2003 689 MobiDBLite consensus disorder prediction 1 46 - -
Glsi03g2003 689 MobiDBLite consensus disorder prediction 245 312 - -
Glsi03g2003 689 ProSitePatterns Protein kinases ATP-binding region signature. 341 363 IPR017441 GO:0005524
Glsi03g2003 689 SUPERFAMILY Protein kinase-like (PK-like) 313 608 IPR011009 -
Glsi03g2003 689 ProSiteProfiles Protein kinase domain profile. 335 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g2003 689 Gene3D Transferase(Phosphotransferase) domain 1 411 620 - -
Glsi03g2003 689 MobiDBLite consensus disorder prediction 665 679 - -
Glsi03g2003 689 Pfam Protein tyrosine and serine/threonine kinase 337 607 IPR001245 GO:0004672|GO:0006468
Glsi03g2003 689 MobiDBLite consensus disorder prediction 131 163 - -
Glsi03g2003 689 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
Glsi03g2003 689 SMART serkin_6 335 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g2003 Glsi-ChrGlsi03 81237952 81241468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g2003 178 663 Trihelix Transcription Factor Family AT1G70460 51.303 1.57e-159 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Glsi03g2003 PK_Tyr_Ser-Thr 5.7e-45 CL0016