LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi03g1990	ATGGTATATGGAAATAACCAAAGGGCTGAGCCGGTTGCCAGTTTACATAATGAACCCACAAAACGAGATTATTCCCCGATTTTGGCACATCCAGCGCGGACACGGAATCCCTTGGAAAATCTAGACAAACCTTTGCCACCACATTGGTCTACTTCTATGCAGGCACATCAAGATTCTGGGTCTGCCACAACTCCCTTTTTAAATCCATATGCAGCTAGTTTTTCCTTTCATCCCTACATGTGGCCAAATCAGGCATACAGCACTCCACTTCAAATTGATTCTCTGCAAGATCCACGGAGACTCTTCAATCGTCCTGTTGTAACCCAGGGTACTGTATTGACAATTTTAGAGAAAGCACATACTATTGCCAGTGATAAGCAACTGGATTCAATGAAAATATGTGATAAGAACTTGCAACCTAGGAGGCCCATTATTAAGAAATCAAGAGAAAATGGGAATGGATCTTCAATGCACAAAAATGACAGAGATGGAGCTTCATGCAGTGCTGCAAGTGCAAGCAGGGGATCATCAGACGAAGGCTATGACACTAACAATGATTTTTTGACTAAGAAGCAGCAGTTTAATACGGTGCTTGGAAATGGGAAAGTTGCAGAGAAGGTGGGCATTGAAAACTGTAACACAGTTCATGTGAATAGAAATTCTGCAGTGCAAGGTCTTGCAGTAAATTCAATTGAGCCAAATCCAAAATTGGGAACAGGCGTCAATGTAATTGGGGCTAATCCCCAACTTACAAAGCTGGATGAAAACGAAATAAGAAAAGAAAGAAAAAGGCAATTAAATAGGGAATCAGCTCGAAGATCAAGGATACGTAAGCAGCTAGAATTCGAAGAGCTAAAAAAATTTTTGGACGGTCTTAGAAGAGAAAATTCCTCCCTTAAGGACAGGCTAATGACCCTTTCTGAGCACTGTGTGGAGCTCACTGATAAAAACAACTCCATTGAGGAAGAACTCGTCGAGATGTATGGGCCAGAATCTATTGCTGATCTTTTGGCCAAGAAGCCTGCTTGA	1029	0.4179	MVYGNNQRAEPVASLHNEPTKRDYSPILAHPARTRNPLENLDKPLPPHWSTSMQAHQDSGSATTPFLNPYAASFSFHPYMWPNQAYSTPLQIDSLQDPRRLFNRPVVTQGTVLTILEKAHTIASDKQLDSMKICDKNLQPRRPIIKKSRENGNGSSMHKNDRDGASCSAASASRGSSDEGYDTNNDFLTKKQQFNTVLGNGKVAEKVGIENCNTVHVNRNSAVQGLAVNSIEPNPKLGTGVNVIGANPQLTKLDENEIRKERKRQLNRESARRSRIRKQLEFEELKKFLDGLRRENSSLKDRLMTLSEHCVELTDKNNSIEEELVEMYGPESIADLLAKKPA	342

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi03g1990	342	Gene3D	-	248	326	-	-
	Glsi03g1990	342	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	257	320	IPR004827	GO:0003700\|GO:0006355
	Glsi03g1990	342	PANTHER	G-BOX-BINDING FACTOR 3-RELATED	44	330	IPR044827	GO:0003700\|GO:0006355\|GO:0043565
	Glsi03g1990	342	SUPERFAMILY	Leucine zipper domain	258	314	IPR046347	GO:0003700\|GO:0006355
	Glsi03g1990	342	MobiDBLite	consensus disorder prediction	158	184	-	-
	Glsi03g1990	342	Pfam	bZIP transcription factor	255	317	IPR004827	GO:0003700\|GO:0006355
	Glsi03g1990	342	Coils	Coil	282	323	-	-
	Glsi03g1990	342	CDD	bZIP_plant_GBF1	260	310	IPR045314	GO:0003700\|GO:0006355
	Glsi03g1990	342	MobiDBLite	consensus disorder prediction	137	157	-	-
	Glsi03g1990	342	MobiDBLite	consensus disorder prediction	137	184	-	-
	Glsi03g1990	342	SMART	brlzneu	255	319	IPR004827	GO:0003700\|GO:0006355
	Glsi03g1990	342	MobiDBLite	consensus disorder prediction	1	24	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi03g1990	Glsi-ChrGlsi03	81143610	81148937	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi03g1990	31	336	bZIP Transcription Factor Family	AT4G36730	29.114	7.35e-33	122

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Glsi03g1990		bZIP_1	1.3e-11	CL0018