Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1975 ATGTCCAAATTTACCTTTTTAATGAAAAGGAATTCTATTCGTTGCTTTCCCGTGCTGCTTCTTCCGTTAAAGGTTCATCTGAGCCTCATCGCCGGAAGCCTCGACTATATGAGCAGCGACGACGATTACCAATACTCCGATCAGGAGTCCGTCGATGACTATGCTAAGGAGGTAGAGTACGATTGTCAGTTAGTTACTGACAATGGTCCCACAACTCAGGTGATTACAAAGGAATCACTTCTAGCGGCACAGAAAGAGGATTTGCGCAGAGTAATGGACATGCTATCAGTGAAAGAGCACCATGCACGTACCCTTCTTATTTATCACCGTTGGGATGTGGAGAAGTTGTTTGCAGTGTACGTAGACAAGGGGAAACCTTTCTTGTTCGCTGAAGCTGGTGTTGGTATGGAAGAACACTGTGATTCAGACACATCAGTTCCTTCCTCAGTAATGTGTGAAATCTGCATGGAGGATGTTCCCAGTGATGAAGCAACAAGAATGGACTGTGGTCACTGTTTTTGCAACGACTGTTGGACGGAGCATTTTATTGTCAAGATAAATGAGGGTCAAAGTAAACGCATTAGGTGCATGGCACACAAATGCTATGCTATTTGCGATGAAGCCGTAGTAAGGACTCTAGTCAGTAAAAGGCAACCTGATATAGCCGAGAAATTTGAGCGTTTTCTTCTTGAATCCTACATCGAAGACAATAAAAGAGTTAAATGGTGCCCCAGCATTCCTCATTGTGGGAATGCAATACGTGTTGAGGATGGTGGATTATGTGAGGTAGAATGTTCATGTGGTTTTCAATTTTGTTTTAGTTGTTTGTCAGATGCACACTCCCCTTGTTCATGTTTGATGTGGGAGCTTTGGATTAAGAAGTGTCAAGATGAATCGGAAACTGTTAACTGGATAACAGTTAATACAAAACCTTGTCCAAAGTGCCACAAACTAGTGGAGAAGAATGGTGGTTGCAACTTGGTTAGCTGTATTTGTGGCCAAGCATTTTGTTGGCTGTGTGGTGCTGCCACTGGCCATGAACATACTTGGACAAGTATAGCCGGTCATAGCTGTGGTCGCTACAAAGACCAACAGGAAAAGGCTGAAAGGGCGAAGCGGGATCTATGTCGGTATGTGCACTATCATAACCGTTATAAAGCTCACTCGGACTCCTTCAAACTTGAAAGTAAATTGACAGAATCTATAGAAGAGAAGGTTGCTATTTCTGAAGGGAAGGATTCCAGTCTCAGGGACTATAGCTGGGTAAATAATGGACTATCCAGACTTTTCAGATCTAGGCGTGTCCTATCATATTCATATCCATTTGCATTTTACATGTTTGGAGATGAGCTATTTAAAGATGAAATGTCAGATGAGCACAGGGAAATAAAACAGAACTTATTTGAGGATCAGCAGCAGCAGCTTGAGACCAATGTTGAAAGGCTCTCCAAAATTTTGGAGGAGCCCTTTGAACAGTTTAATGATGACAAGGTTATAGAAATAAGGATGCAGGTTATCAATCTGTCTACAATTATTGACAAACTTTGTCAGAAAATGTATGAGTGCATTGAGAATGAATTATTGGATTCTCTCCAACTGGGGATTCACAGTATAGCTCCATACAAGTCAAAGGGCATAGAGAGGGCATCAGAACTTCGAGTTTGTTGGAGCAATGAAGCCAATAATACTGGTGGAACAGCAGAACTTGATCTTCCTTCTGCGTCTGGAAGTTCAGATGATAGTGGGGGCTCTTCTCGTAAGCGTGCTCGAAAAGAGGGTCTTGGACTCGGAGGCCATTTTGATCTAAACTTGCCAGCAGAGGAATTTTGTCGGTTCATTAGAAACGTAGAGTTACCGATAAAGTCAAAGCGAAATGAAGAACATAAAAGGGATGTTGTTATCTCCTTCACAATGTGCTATTCCGCCCATCATAGTTTGCATTGTCACAGCGTCTTTATTTCCAAAACACAAACAGAGATGGAGGACGAAGGTACAGGGTTAGTGTTGGCCAGAGCCACTGAACTTCGATTGAAGATCAGCAATTCAATCCACAGAGCCTCGAGTCCACCTCAACACGCCGATGCAAACCACGACTCCTCTTCCCGTTCGCTCACCCATTTGAATGAAGCACACGATGACGAAAACGAACAAGAAGCTGAAGCCGAAAGGCTATACAACATTTGCGATGCCCTTGAATCCTTGGAGGCCCAGCTATGTTCCTTGCAGGTTCTACAACAACAACAGCGGTATGAAAGAGAAGTTGCGCTTGCCGAGATTGAAAACTGCCGCAAAATGTTAATTAATAAGCTCAAGGAGTACAAAGGAAAGGAATTGGAAGTGATACATGAAGCTTCTACTTTTGCAAGCGAAACAGTGGAGCGCAGCAACGATCTCCTACTTCCTCCATATCCAAGCCGTCCTCCTTACATTATGTGTCTGCAGAAGGACTTTTTGTCACCGATCCCTTCCATGCATAAGTCTGTTCACAATGGGATAATCACAATTGATCCACTGATTGAAGCAAGGAAGAGTCTAAATGAAAAAGAGCAAAATCATGTCCAAGCTGGGGCCAAAAATTCAAGAAAAGGATTGGGATTTTTTATGACTTGTGCAGCCAAAACAATGCTTACAGTTGTTGGCGTGGTATCAATATTAAGTTTGTCTGGGTTTGTGCCTAATTTGGGAAAGTTAGGTAGCCGTTTAAATGGTCTAGACCTGCTTCGACAAGATAATGAGGATGAGAGATCAAGTACTCAATGTGCACCGGGTAGAATCATGGTGCTAGAAAACGGGGAAGCTCGATGTATTGTGAAAGAGAGAATTGAGGTTCCATTTTCGGCAGTTGCCGCAACACCAGATATAAACTATGGATGTGGTTAA 2880 0.4285 MSKFTFLMKRNSIRCFPVLLLPLKVHLSLIAGSLDYMSSDDDYQYSDQESVDDYAKEVEYDCQLVTDNGPTTQVITKESLLAAQKEDLRRVMDMLSVKEHHARTLLIYHRWDVEKLFAVYVDKGKPFLFAEAGVGMEEHCDSDTSVPSSVMCEICMEDVPSDEATRMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCYAICDEAVVRTLVSKRQPDIAEKFERFLLESYIEDNKRVKWCPSIPHCGNAIRVEDGGLCEVECSCGFQFCFSCLSDAHSPCSCLMWELWIKKCQDESETVNWITVNTKPCPKCHKLVEKNGGCNLVSCICGQAFCWLCGAATGHEHTWTSIAGHSCGRYKDQQEKAERAKRDLCRYVHYHNRYKAHSDSFKLESKLTESIEEKVAISEGKDSSLRDYSWVNNGLSRLFRSRRVLSYSYPFAFYMFGDELFKDEMSDEHREIKQNLFEDQQQQLETNVERLSKILEEPFEQFNDDKVIEIRMQVINLSTIIDKLCQKMYECIENELLDSLQLGIHSIAPYKSKGIERASELRVCWSNEANNTGGTAELDLPSASGSSDDSGGSSRKRARKEGLGLGGHFDLNLPAEEFCRFIRNVELPIKSKRNEEHKRDVVISFTMCYSAHHSLHCHSVFISKTQTEMEDEGTGLVLARATELRLKISNSIHRASSPPQHADANHDSSSRSLTHLNEAHDDENEQEAEAERLYNICDALESLEAQLCSLQVLQQQQRYEREVALAEIENCRKMLINKLKEYKGKELEVIHEASTFASETVERSNDLLLPPYPSRPPYIMCLQKDFLSPIPSMHKSVHNGIITIDPLIEARKSLNEKEQNHVQAGAKNSRKGLGFFMTCAAKTMLTVVGVVSILSLSGFVPNLGKLGSRLNGLDLLRQDNEDERSSTQCAPGRIMVLENGEARCIVKERIEVPFSAVAATPDINYGCG 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1975 959 CDD BRcat_RBR_ANKIB1 230 294 - -
Glsi03g1975 959 SUPERFAMILY RING/U-box 293 350 - -
Glsi03g1975 959 Coils Coil 704 724 - -
Glsi03g1975 959 CDD Rcat_RBR_ARI1-like 306 359 - -
Glsi03g1975 959 Pfam Ariadne domain 362 607 IPR045840 -
Glsi03g1975 959 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 236 IPR013083 -
Glsi03g1975 959 FunFam RBR-type E3 ubiquitin transferase 147 237 - -
Glsi03g1975 959 SUPERFAMILY RING/U-box 149 235 - -
Glsi03g1975 959 ProSiteProfiles TRIAD supradomain profile. 148 362 IPR044066 -
Glsi03g1975 959 Coils Coil 756 776 - -
Glsi03g1975 959 MobiDBLite consensus disorder prediction 683 702 - -
Glsi03g1975 959 SMART ibrneu5 223 285 IPR002867 GO:0008270
Glsi03g1975 959 SMART ibrneu5 293 358 IPR002867 GO:0008270
Glsi03g1975 959 Gene3D - 281 530 - -
Glsi03g1975 959 MobiDBLite consensus disorder prediction 566 582 - -
Glsi03g1975 959 FunFam RBR-type E3 ubiquitin transferase 281 528 - -
Glsi03g1975 959 CDD RING-HC_RBR_TRIAD1 150 201 - -
Glsi03g1975 959 PANTHER PLASTID DIVISION PROTEIN PDV2 660 959 IPR038939 GO:0010020
Glsi03g1975 959 ProSiteProfiles Zinc finger RING-type profile. 152 200 IPR001841 -
Glsi03g1975 959 MobiDBLite consensus disorder prediction 566 590 - -
Glsi03g1975 959 SUPERFAMILY RING/U-box 223 292 - -
Glsi03g1975 959 Pfam IBR domain, a half RING-finger domain 301 348 IPR002867 GO:0008270
Glsi03g1975 959 Pfam IBR domain, a half RING-finger domain 223 285 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1975 Glsi-ChrGlsi03 81066886 81076257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1975 92 586 ARIADNE family AT2G16090 70.942 0.0 727