Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1962 ATGCCGCACCCCTGTTTTCACAAGCTTATTGTTCCCTCGACGCTCCAGGCCAGGCAACTGAATATTCCAGATAATTTTCTCAGGAAATTTGGAGGTGAGCTTTCTACTGTTGCTACCCTCACTGTTCCTGATGGCAGTGTCTGGCGTGTAGGATTAAAAAAGGTGGACAACAAATTTTGGTTCCTTGATGGTTGGCATGAATTTGTTCAACGATACTCTATTGGCATTGGATACTTTTTGGTATTCAGATATGTTGGAAAATCATCTTTCAATGTTCATATTTTCAATTTGGCTACTTCTGAGATAAATTACCAATCAACTGCACGAAGCAGTAATGAAGGGACTTACTTTGCCAATCAACATCTTATTTTTAACGAAATGGAAGATGAAGACTCCATTGAATTCTTGGATTCATCACCTTCATCTCTTACTCCTGGTGCATTGCAAAACAAGGTTTTTGCTGGATCTGTAACACCTGGCAAAGGTTATACTTCTCCAGCATTGCAGAATTTGTTTAATGGGTCTAAACTCAACAGCATAAACTGGTCAGATGGTGGGAATACCCTTTCTTCAAAGGCTACCAATTCACAAGACATTCAGTCAAGCAGAAATATAGGTGTTCAGTTTAATGCAGTTGAGTTTAAAAGGTCTACTGAAGAATTAAAATTGCGTGTTTCTGATGCGGGAATGCAAAGTGTTAAAAAAACTATAAGAAAGAAGCGGAAAATGGATCCTGATGGACAGGAACCCGCTGCTCAACATGAAGAGGAGGTAGAAATGCGCTATAGATTTTATGAAAGTGCTTCTGCGAGAAAAAGAACTGTGACAGCAGAAGAAAGAGAGAGGGCAATTAATGCAGCAAAAGCATTTGAACCCCCTAATCCTTTCTGTCGGGTTGTCCTGCGACCCTCCTATTTATATAGAGGATGCATAATGTATTTGCCATCCTGCTTTGCAGAAAAGCATTTGAATGGAGTTTCAGGGTTCATTAAACTTCAGATCTCTGATGGAAGACAATGGCCTGTTCGCTGCCTTTACAGAGGAGGTAGAGCAAAGTTAAGCCAAGGGTGGTTTGAATTTTCGTTAGAAAACAATTTAGCGGAAGGCGACGTCTGTATTTTTGAACTTCTTAGAATGAAGGATGTAGTGCTGAAAGTTACTCTGTTTCGCGTCATTGAGGATGCAGGATTTTCAAACCCTCCTTTGCATCAAAGCCAAAGTGTCAGCACAGAAAAAATGTTGAATACTCCTATGCAGCAAAACATCATCACAACCAAACTGATTAGAAACTAG 1293 0.4006 MPHPCFHKLIVPSTLQARQLNIPDNFLRKFGGELSTVATLTVPDGSVWRVGLKKVDNKFWFLDGWHEFVQRYSIGIGYFLVFRYVGKSSFNVHIFNLATSEINYQSTARSSNEGTYFANQHLIFNEMEDEDSIEFLDSSPSSLTPGALQNKVFAGSVTPGKGYTSPALQNLFNGSKLNSINWSDGGNTLSSKATNSQDIQSSRNIGVQFNAVEFKRSTEELKLRVSDAGMQSVKKTIRKKRKMDPDGQEPAAQHEEEVEMRYRFYESASARKRTVTAEERERAINAAKAFEPPNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNGVSGFIKLQISDGRQWPVRCLYRGGRAKLSQGWFEFSLENNLAEGDVCIFELLRMKDVVLKVTLFRVIEDAGFSNPPLHQSQSVSTEKMLNTPMQQNIITTKLIRN 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1962 430 MobiDBLite consensus disorder prediction 234 255 - -
Glsi03g1962 430 SUPERFAMILY DNA-binding pseudobarrel domain 290 390 IPR015300 -
Glsi03g1962 430 Gene3D - 1 98 IPR015300 -
Glsi03g1962 430 SMART B3_2 297 392 IPR003340 GO:0003677
Glsi03g1962 430 SMART B3_2 6 98 IPR003340 GO:0003677
Glsi03g1962 430 PANTHER B3 DOMAIN-CONTAINING 3 380 - -
Glsi03g1962 430 ProSiteProfiles B3 DNA-binding domain profile. 297 392 IPR003340 GO:0003677
Glsi03g1962 430 CDD B3_DNA 4 96 IPR003340 GO:0003677
Glsi03g1962 430 SUPERFAMILY DNA-binding pseudobarrel domain 2 96 IPR015300 -
Glsi03g1962 430 CDD B3_DNA 295 390 IPR003340 GO:0003677
Glsi03g1962 430 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Glsi03g1962 430 MobiDBLite consensus disorder prediction 239 255 - -
Glsi03g1962 430 Gene3D - 274 394 IPR015300 -
Glsi03g1962 430 Pfam B3 DNA binding domain 300 390 IPR003340 GO:0003677
Glsi03g1962 430 Pfam B3 DNA binding domain 7 95 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1962 Glsi-ChrGlsi03 80979576 80982649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1962 1 396 B3 DNA Binding Superfamily AT3G18990 53.133 2.94e-137 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Glsi03g1962 B3 2.2e-15 CL0405