Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1941 ATGATGGGTTCGCTTCCTCCACAGCTGAGCTTGGATTTGAGACCCACTTTTGTTCCTAAAACGATCACTGATTTTCTTTACGAGGTTTCCACGATCGCGAATGCGCCCGATAAGCTCTCAAGGCTTGATGATTTTGTCAGAAGATTGGAAGAGGAAATGAGGAAGATTGACGCGTTTAGGCGCGAGCTTCCTCTCTGCATGCTCCTCTTGAATGATGCAATTTTAGTTCTGAGGGAGGAATCGGAAAAATTCAGGACACCTAATTCTCAGCCAGTACTGGAAGAATTTATACCCTTGAGGAAAGAATGTGATCAGAAGGAGGAAAAGAAAAAAGAAAAGGAATGCAAAGATAAGAAGAATTGGATGAGTTCCGTTCAGCTCTGGAACACTGCTAATTATTCCACTACTAATAATGCGCATGAACAAAAACAACATTATAAATTAGAAAACAAGCACAAAAACGAAGAAGGACAATCGGTGGCGGAGGACCCCTTCCAGTCTTGTAGAAATAGAAATGGAGGCAGTGTGTTCATGCCTTTTACAACATACCCTGCTGTCGCTGTGACAACAACGAAGGAAGAAAAGGAAGAGTCTGATATTAATGAACTTTCTCTTCTGACTCCTGGAATTAAAAATCTGAGGGAGGGATCCGTTTCTAGTGGATCAAGAATCAGCTCTAGTGGAGCGGTTTCACCCTCTCCTCGCAGTGACCAGCCAAGTTTACGAACTGCACCACAGCAGACTGCTCGGAAACAGAGAAGGTGTTGGTCGCCAGAGTTACATCGTCGATTTGTTAATGCACTCCAGCAACTCGGAGGATCTCAAGCTGCAACTCCAAAGCAAATTAGAGAACTCATGCAGGTTGATGGCCTGACCAACGATGAAGTGAAGAGTCATTTACAAAAATACCGACTTCATACTCGGAGAGTTCCAGCTGCAACAGTTGCACCTGGTAATCAATCTGTTGTAGTTCTTGGAGGTATGTGGATGTCCCAAGATCGGTATAATGACTCCTCGAAGGGTAACTTTTCAGGGTCTGGCTCTCCTCAAGGCCCCCTCCAGTTAGCTGCAGGATCTGGAGGAGGGACCTCCCCAACTGAGGATGACAGCTTTGAAGACGATGAAGATGCAAAATCCAGAGAGGTATAG 1149 0.45 MMGSLPPQLSLDLRPTFVPKTITDFLYEVSTIANAPDKLSRLDDFVRRLEEEMRKIDAFRRELPLCMLLLNDAILVLREESEKFRTPNSQPVLEEFIPLRKECDQKEEKKKEKECKDKKNWMSSVQLWNTANYSTTNNAHEQKQHYKLENKHKNEEGQSVAEDPFQSCRNRNGGSVFMPFTTYPAVAVTTTKEEKEESDINELSLLTPGIKNLREGSVSSGSRISSSGAVSPSPRSDQPSLRTAPQQTARKQRRCWSPELHRRFVNALQQLGGSQAATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRVPAATVAPGNQSVVVLGGMWMSQDRYNDSSKGNFSGSGSPQGPLQLAAGSGGGTSPTEDDSFEDDEDAKSREV 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1941 382 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 248 308 IPR017930 -
Glsi03g1941 382 SUPERFAMILY Homeodomain-like 248 309 IPR009057 -
Glsi03g1941 382 Pfam Myb-like DNA-binding domain 253 304 IPR001005 -
Glsi03g1941 382 NCBIfam myb-like DNA-binding domain, SHAQKYF class 251 306 IPR006447 GO:0003677
Glsi03g1941 382 Gene3D - 250 308 - -
Glsi03g1941 382 MobiDBLite consensus disorder prediction 336 382 - -
Glsi03g1941 382 MobiDBLite consensus disorder prediction 336 366 - -
Glsi03g1941 382 MobiDBLite consensus disorder prediction 214 253 - -
Glsi03g1941 382 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 10 376 IPR044787 GO:0003700|GO:0006355
Glsi03g1941 382 MobiDBLite consensus disorder prediction 214 254 - -
Glsi03g1941 382 FunFam Myb family transcription factor 250 308 - -
Glsi03g1941 382 Coils Coil 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1941 Glsi-ChrGlsi03 80849477 80851488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1941 8 330 G2-like Transcription Factor Family AT2G03500 39.943 4.99e-65 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Glsi03g1941 Myb_DNA-binding 6.1e-07 CL0123