Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1933 ATGGGGGTTTGTACCTCCAAGCCGCCAAAGCCCAACCCATTTTCCGTACGAGAACCGGAAGGCGACCATGGTCCTTATGATCCTTCAGAAATCCCAAAAGGCCCACTTTCTCCCATCACCAACAACCACCACCGGAAAGATGAGGTTGTTGCTGGGAAGCAGTCTCCTTTCTTCCCCTTCTACAGTCCTAGTCCAGCTCGCTTCTTTAAAAAGTCTCCGGCGCCAACGGGAGGGAGCAGGAGCGCCAGTTCGACGCCGGGAAGAATTTTCCGGCGTCCTTTCCCTCCGCCGTCTCCCGCCAAACACATAAAGGCTTTGCTAGCGAAGAGACAGGGGAAGAAAACCGCAACGGCCATACCAGAAGAGCGAGATGAGGAAGCGAGGAGTGCAGTGGATTTGGACAAGAGGTTTGGATTTTCAAAAGAGTTCACCAGTAGGTTGGAAGTTGGGGAAGAAGTGGGCAGAGGGCATTTTGGGTATACTTGTTCTGCTAGATTCAAGAAGGGCGAGCTTAAGGGTCAGCAAGTGGCCGTCAAGGTCATTCCCAAAGCTAAGATGACAACAGCAATTGCAATTGAAGATGTAAGAAGGGAGGTGAAAATATTGCGAGCTTTGACTGGACACAACAATCTGATACAATTCCATGATGCATTTGAAGACCAGGATAATGTCTATATTGTAATGGAGTTATGTGAAGGAGGGGAACTTTTAGATAGGATACTATCAAGAGGAGGAAAATACTCAGAAGAAGATGCAAAAGCTGTCATGGTACAGATACTAAATGTTGTTGCATTTTGTCATCTCCAGGGTGTGGTGCACCGAGATCTAAAGCCAGAGAATTTTTTGTATGCTTCGAAGGATGAGAATTCCGAGTTAAAAGCTATAGACTTTGGATTGTCAGACTTTGTCAAACCAGATGAAAGGCTCGATGACATTGTTGGAAGTGCATACTATGTGGCACCTGAAGTTCTACATAGATCTTACAGTACAGAAGCTGATGTGTGGAGTATAGGTGTAATAGCATATATTCTTTTATGTGGTAGTCGTCCTTTTTGGGCCCGAACAGAGTCTGGTATTTTTAGGGCAGTTTTGAAAGCCGACCCAAGCTTTGATGAAGCTCCTTGGCCTTCTTTATCTTCAGAAGCAAAAGATTTTGTCAAGCGTCTATTAACTAAGGACCCACGAAAGCGAATATCAGCTGCTCAGGCCCTAAGTCATCCTTGGATACGAAATTACAATAACTTAAAGGTTCCTCTTGATATTTTAATATTTAGGCTCATGAAGGCTTATATGCGATCATCATCCTTGCGGAAGGCTGCATTAAGGGCCTTGTCAAAGACATTGACTGCTGATGAACTTTATTATCTGAAGGAGCAATTTGCTATGCTGGGGCCAAGCAAAAATGGCAGCATAACCTTAGAAAACATTAAAATGGCCCTGATGAAACATGCAACAGACGCCATGAAAGAGTCTTGCATCCCTGATTTCCTTGCCTCGCTAAACTCGTTACAATATAGAAGAATGGATTTTGAAGAATTTTGTGCAGCTGCATTAAGTGTGCATCAGCTTGAAGCTCTAGAGCGCTGGGAACAACATGCCCGCTGTGCTTATGAACTTTTTGAAAAAGATGGAAACAGGGCTATTATCATTGAAGAACTTGCTTCAGAACTTGGACTTGGTCCTTCCATCCCACTTCATGTTGTACTCCAGGACTGGATAAGGCACACTGATGGGAAGCTAAGCTTTCTTGGGTTTGTCAAATTGTTACATGGTGTATCTAACCGAACTCTTGCAAAGGTGCAATAA 1806 0.4441 MGVCTSKPPKPNPFSVREPEGDHGPYDPSEIPKGPLSPITNNHHRKDEVVAGKQSPFFPFYSPSPARFFKKSPAPTGGSRSASSTPGRIFRRPFPPPSPAKHIKALLAKRQGKKTATAIPEERDEEARSAVDLDKRFGFSKEFTSRLEVGEEVGRGHFGYTCSARFKKGELKGQQVAVKVIPKAKMTTAIAIEDVRREVKILRALTGHNNLIQFHDAFEDQDNVYIVMELCEGGELLDRILSRGGKYSEEDAKAVMVQILNVVAFCHLQGVVHRDLKPENFLYASKDENSELKAIDFGLSDFVKPDERLDDIVGSAYYVAPEVLHRSYSTEADVWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDEAPWPSLSSEAKDFVKRLLTKDPRKRISAAQALSHPWIRNYNNLKVPLDILIFRLMKAYMRSSSLRKAALRALSKTLTADELYYLKEQFAMLGPSKNGSITLENIKMALMKHATDAMKESCIPDFLASLNSLQYRRMDFEEFCAAALSVHQLEALERWEQHARCAYELFEKDGNRAIIIEELASELGLGPSIPLHVVLQDWIRHTDGKLSFLGFVKLLHGVSNRTLAKVQ 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1933 601 ProSitePatterns Protein kinases ATP-binding region signature. 153 179 IPR017441 GO:0005524
Glsi03g1933 601 SMART serkin_6 147 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1933 601 ProSitePatterns Serine/Threonine protein kinases active-site signature. 271 283 IPR008271 GO:0004672|GO:0006468
Glsi03g1933 601 FunFam CDPK-related kinase 1 140 235 - -
Glsi03g1933 601 MobiDBLite consensus disorder prediction 68 100 - -
Glsi03g1933 601 Gene3D Transferase(Phosphotransferase) domain 1 237 429 - -
Glsi03g1933 601 FunFam CDPK-related kinase 1 445 518 - -
Glsi03g1933 601 ProSiteProfiles Protein kinase domain profile. 147 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1933 601 MobiDBLite consensus disorder prediction 1 51 - -
Glsi03g1933 601 SUPERFAMILY EF-hand 437 591 IPR011992 -
Glsi03g1933 601 FunFam CDPK-related kinase 3 139 311 - -
Glsi03g1933 601 MobiDBLite consensus disorder prediction 108 127 - -
Glsi03g1933 601 Pfam Protein kinase domain 148 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1933 601 Gene3D Phosphorylase Kinase; domain 1 149 236 - -
Glsi03g1933 601 SUPERFAMILY Protein kinase-like (PK-like) 143 441 IPR011009 -
Glsi03g1933 601 Gene3D - 430 588 - -
Glsi03g1933 601 Gene3D - 449 518 - -
Glsi03g1933 601 PANTHER SERINE/THREONINE-PROTEIN KINASE 134 576 - -
Glsi03g1933 601 FunFam Calcium-dependent protein kinase SK5 319 413 - -
Glsi03g1933 601 CDD STKc_CAMK 148 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1933 Glsi-ChrGlsi03 80804951 80811211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1933 1 597 EF-hand Containing Proteins AT3G50530 70.690 0.0 912
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Glsi03g1933 Pkinase 4.7e-71 CL0016