Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1926 ATGGATAAGTACCGGATAAATGATTTTCTTTTTGGAGAAAATAATATTAATCCATTGTCTAACCCCAGATCCAAACCCGTGTTCCGTTCTATATATAAAACCTACCCTCCTGTTCTAAATCCTCCTCTTTCTCTTGCTCTGAGACTCCTGGTCTTGGCGTCTGCCTCCTGCTTGGACCAGGTCCTCTCCCTCCCTCTCTCTCTTTCTCAGAGCTCGCTATTGCACTTCAATTTCTGTTCCGTAACTTCCGGAGTTCGAGAGGAAGGGAGAGAGAATCTAGAACGTATGGCTCAGCCCACCAACAGTGCTGATCTGAATCAGCATCAGCATCAGCAGCAGTGGACGCAGCCGCATCAGTATCAACAGCAATGGATGTCTATGCAGTACCCGGCTGCTGCCATGGCCATGATGCAGCAGCAGATGATGATGTATCCGCAGCATTACATGCCTTATGTCCACCATTATCCGCCTCCTCACCAGCAGCCCAAGCCCCAGCCGCCGCCTCAGCACCAGCTGCAGCAGCAGCAAAAGCAAGGGTCCACAGATGAGATCAGGACGATCTGGCTCGGTGACCTTCATCATTGGATGGACGAGAACTACCTGCATAACTGTTTTGCTCATACAGGCGAGGTTTTATCGGCCAAGGTTATACGAAATAAGCAAACTGGCCAGTCAGAGGGATATGGATTTGTTGAGTTTTATTCGCGTACAACAGCTGAGAAAGTTTTGAACAGCTACAATGGTACTATGATGCCAAACACAGACCAGCCCTTTCGTCTGAATTGGGCTACATTCAGTGCGGGTGATAGAAGATCTGATGCTAGTTCTGATCTTTCTATATTTGTCGGGGATTTGGCTGTAGATGTTACTGATGCTATGCTGCAGGAAACCTTTTCTAGCAGATATACTTCTGTTAAGGGAGCAAAAGTTGTCTTTGATTCAAATACTGGCCGTTCAAAAGGTTATGGTTTTGTAAGGTTTGCTGATGAAAATGAAAGGACAAGGGCCATGACTGAGATGAATGGAGTTTATTGTTCAAGTAGGCCTATGAGAATAGGCGTTGCAACCCCAAAGAAATCCTATGGGTATCAACAACAATATTCTTCCCAAGCTCTGGTGTTAACTAATGGACATTCTTCTAATGGTGCTATTGCCCAAGGTTCCCAACCTGAAGGGGACTTCAGTAACACAACTATTTTTGTTGGAGGGCTTGATTCTGATGTTAGTGATGAAGATCTCAGACAACCATTTTTGCAATTTGGTGAGGTTGTCTCTGTCAAAATACCAGTGGGTAAAGGTTGTGGCTTTGTTCAATTTTCTGACAGAAAGAATGCTGAGGAAGCAATTCAGGCATTGAATGGAACAGTAATTGGGAAGCAGACAGTGCGTCTTTCTTGGGGTCGCAGTCCTGGAAATAAGCATTGGAGGACTGATTCCAACGGAGGTCATTATGGAGGGCAGAACTATGGAAGCCATGGGTATGCCGTGAGACAGAATCAGGATATCAGCATGCATGTTGCTGCTACTGTTCAAGGGGCTTCCTAA 1545 0.4576 MDKYRINDFLFGENNINPLSNPRSKPVFRSIYKTYPPVLNPPLSLALRLLVLASASCLDQVLSLPLSLSQSSLLHFNFCSVTSGVREEGRENLERMAQPTNSADLNQHQHQQQWTQPHQYQQQWMSMQYPAAAMAMMQQQMMMYPQHYMPYVHHYPPPHQQPKPQPPPQHQLQQQQKQGSTDEIRTIWLGDLHHWMDENYLHNCFAHTGEVLSAKVIRNKQTGQSEGYGFVEFYSRTTAEKVLNSYNGTMMPNTDQPFRLNWATFSAGDRRSDASSDLSIFVGDLAVDVTDAMLQETFSSRYTSVKGAKVVFDSNTGRSKGYGFVRFADENERTRAMTEMNGVYCSSRPMRIGVATPKKSYGYQQQYSSQALVLTNGHSSNGAIAQGSQPEGDFSNTTIFVGGLDSDVSDEDLRQPFLQFGEVVSVKIPVGKGCGFVQFSDRKNAEEAIQALNGTVIGKQTVRLSWGRSPGNKHWRTDSNGGHYGGQNYGSHGYAVRQNQDISMHVAATVQGAS 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1926 514 MobiDBLite consensus disorder prediction 153 181 - -
Glsi03g1926 514 FunFam Polyadenylate-binding protein RBP47 379 495 - -
Glsi03g1926 514 FunFam Polyadenylate-binding protein RBP47B 184 264 - -
Glsi03g1926 514 SMART rrm1_1 186 261 IPR000504 GO:0003723
Glsi03g1926 514 SMART rrm1_1 279 353 IPR000504 GO:0003723
Glsi03g1926 514 SMART rrm1_1 398 465 IPR000504 GO:0003723
Glsi03g1926 514 Gene3D - 184 264 IPR012677 -
Glsi03g1926 514 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 397 469 IPR000504 GO:0003723
Glsi03g1926 514 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 171 473 - -
Glsi03g1926 514 MobiDBLite consensus disorder prediction 153 169 - -
Glsi03g1926 514 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 254 IPR000504 GO:0003723
Glsi03g1926 514 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 280 349 IPR000504 GO:0003723
Glsi03g1926 514 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 399 462 IPR000504 GO:0003723
Glsi03g1926 514 Gene3D - 375 501 IPR012677 -
Glsi03g1926 514 CDD RRM1_SECp43_like 186 266 - -
Glsi03g1926 514 Gene3D - 265 371 IPR012677 -
Glsi03g1926 514 FunFam Polyadenylate-binding protein RBP47B 266 368 - -
Glsi03g1926 514 SUPERFAMILY RNA-binding domain, RBD 150 267 IPR035979 GO:0003676
Glsi03g1926 514 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 278 357 IPR000504 GO:0003723
Glsi03g1926 514 CDD RRM2_SECp43_like 277 356 - -
Glsi03g1926 514 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 265 IPR000504 GO:0003723
Glsi03g1926 514 CDD RRM3_NGR1_NAM8_like 396 467 - -
Glsi03g1926 514 SUPERFAMILY RNA-binding domain, RBD 278 471 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1926 Glsi-ChrGlsi03 80772182 80779044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1926 184 468 Eukaryotic Initiation Factors Gene Family AT2G23350 29.252 9.26e-29 118