Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1919 ATGGCCGTAGTTAAAAAACCCAATAAGAGGCGGAGGCCTTCGGCCACGCCTCCAAAGGTCAAGAGAGCAAAAGAGGTTCAAGCAAACCTATCCCATAAATTTCCAAGCCTTATCAAGTTGATGCTCCCATCACACGTAACTGGGGGGTTTTGGCTGGGTCTTCCTAAAAAATTCTGTCAGTTGCATATGCCAAAGGCTGATACTATCATTGCTTTGGAAGATGAGAGTGGGAAAGAATATGAAACAAAATATCTTGTTGAGAAGATGGGCTTAAGCGGTGGATGGAGAGGGTTTTCCTTGGCTCACAATTTATTTCAAGGGGATGCCTTAGTTTTCCACTTAGTCCAACCTTCCAAATTTAAGGTGTACATTATAAGATGTCATGGCTCAAACGAAGTGGATGTTGCTCTCAGCCTTCTTAAGTTAGATGGTTGCATGAAACAAAAGGATTTTGATGTTCTTCAAGAAAATGATCCAAACAGTAGCAGCATGATCTGTGGTGCTATTGTATCTCAATCAGATCAGCCTGAAAATACCAGTGAAGATTTTGGCTCTGAAGTTTTGGGTGGGATTAGACTATCAGAATCCATAATCACTTTCCAAGAAGTGACAGGTATTGAGAATTTTAGAATTCTCGTAAATGGTTTGGTGATTGACTCAGAGCTCTCCAACTACCTCCGGACCAAGTACTTTGAACTCTGCTGCAGCCAGAGATTGTTTCTTCACGACCATCTTCTTGAGGGTCTTAACTGTAAACTGGTTGCTGGAATAATCTCTGAGACCATCAATATTGCTGATGCCATTAGAGCCAGCAAGATCACAACCTCTCCAGATAGTTTTGCTGTATGGGAAAAAACACTGAAAGCCTCTGAGGCGATGGGCATGAACATCAGGTTCCTGCTTACCCGGCTATACCAGCTCATGAGTCTAGCTTCAAAATCCCAGAGGTACAAAGAGGCAAGACTTGAACGAGACCTTGCTGAAGAGGAAATGAAAATTCTAGAAGCAAAGCTTGTGGAAGTGAAAGAGACCATGAATAGACTTGATGTTGAGATGAACTCCCAAGATCTGAGCTCTCATAGGCTAGAGGTTATGTTTCAAGTACTGGCTAATGCTCCTTGGTGA 1125 0.4258 MAVVKKPNKRRRPSATPPKVKRAKEVQANLSHKFPSLIKLMLPSHVTGGFWLGLPKKFCQLHMPKADTIIALEDESGKEYETKYLVEKMGLSGGWRGFSLAHNLFQGDALVFHLVQPSKFKVYIIRCHGSNEVDVALSLLKLDGCMKQKDFDVLQENDPNSSSMICGAIVSQSDQPENTSEDFGSEVLGGIRLSESIITFQEVTGIENFRILVNGLVIDSELSNYLRTKYFELCCSQRLFLHDHLLEGLNCKLVAGIISETINIADAIRASKITTSPDSFAVWEKTLKASEAMGMNIRFLLTRLYQLMSLASKSQRYKEARLERDLAEEEMKILEAKLVEVKETMNRLDVEMNSQDLSSHRLEVMFQVLANAPW 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1919 374 Gene3D - 16 128 IPR015300 -
Glsi03g1919 374 CDD B3_DNA 35 126 IPR003340 GO:0003677
Glsi03g1919 374 MobiDBLite consensus disorder prediction 1 17 - -
Glsi03g1919 374 Coils Coil 310 351 - -
Glsi03g1919 374 ProSiteProfiles B3 DNA-binding domain profile. 37 128 IPR003340 GO:0003677
Glsi03g1919 374 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 16 128 IPR044837 -
Glsi03g1919 374 SMART B3_2 37 128 IPR003340 GO:0003677
Glsi03g1919 374 SUPERFAMILY DNA-binding pseudobarrel domain 30 127 IPR015300 -
Glsi03g1919 374 MobiDBLite consensus disorder prediction 1 24 - -
Glsi03g1919 374 Pfam B3 DNA binding domain 38 126 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1919 Glsi-ChrGlsi03 80735456 80744798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1919 22 128 B3 DNA Binding Superfamily AT3G19184 57.009 9.94e-40 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Glsi03g1919 B3 4.2e-15 CL0405