Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1909 ATGTCCTCCCACAAGAGATCCAGACTCGCCGGAACGAACCCCGCCCCCTCCTCCTCTTCGCCGCCGCCAATTCGTCTCACCAGAGAACAAGAACTCTCCGTCATCGTCTCCACACTCACCAACGTCGTGGTGGGTTCCACCACCGAATTCCACTTACCGCTGACATCGGAGCATGCCGAAGTTCCCACCTCCGCCGCCACGGGAAACAGCTTCGGCTACCCCGACCAAACAGTACCCACCGGAAACTCCGAAACTTGCCACGAATGCAAAATTGCTGGGTGCTTGGGCTGCAAATTCTTCCCGGAAGAGAAGAAGAATAACGGTAGTGGGAGCAAGCAGAAGAGAGCGAAGAAGAAATACAGGGGCGTGAGACAGAGACCGTGGGGGAAATGGGCGGCGGAGATCCGAGACCCGAGACGTGCGACCCGGGTTTGGTTGGGGACGTTCAGTACTGCCGAGGAAGCAGCACAAGCATACGATAAAGCAGCTATCGAGTTCCGCGGACCCAGAGCGAAGCTCAACTTTCCGGTATTTGATAACTCGCTGAGTTCTCGGGAAGCAGAAACTTCGGTGATGGCGACTGTTGCGGCGGAGCAGGGGAATGAGAATGAGAATGAGAATTCGAATCCGGAAAATTATGGCGGCGCGTCCATGGGAATAGGAACGATGGTATTGGAGGATAAGGAATGTGAGTTCTGGGATAGGATTGGAGAACCCGACTTTGAGCAGTTGATGATGAATTTTGCTGGAGATTCTTCCAACACTGCTCCAGGAGCTACTCGGAGTTGGTAA 792 0.5442 MSSHKRSRLAGTNPAPSSSSPPPIRLTREQELSVIVSTLTNVVVGSTTEFHLPLTSEHAEVPTSAATGNSFGYPDQTVPTGNSETCHECKIAGCLGCKFFPEEKKNNGSGSKQKRAKKKYRGVRQRPWGKWAAEIRDPRRATRVWLGTFSTAEEAAQAYDKAAIEFRGPRAKLNFPVFDNSLSSREAETSVMATVAAEQGNENENENSNPENYGGASMGIGTMVLEDKECEFWDRIGEPDFEQLMMNFAGDSSNTAPGATRSW 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1909 263 FunFam Ethylene-responsive transcription factor 2 118 177 - -
Glsi03g1909 263 MobiDBLite consensus disorder prediction 1 15 - -
Glsi03g1909 263 CDD AP2 118 177 IPR001471 GO:0003700|GO:0006355
Glsi03g1909 263 Gene3D AP2/ERF domain 118 178 IPR036955 GO:0003700|GO:0006355
Glsi03g1909 263 Pfam AP2 domain 119 168 IPR001471 GO:0003700|GO:0006355
Glsi03g1909 263 SMART rav1_2 119 182 IPR001471 GO:0003700|GO:0006355
Glsi03g1909 263 PRINTS Ethylene responsive element binding protein signature 120 131 IPR001471 GO:0003700|GO:0006355
Glsi03g1909 263 PRINTS Ethylene responsive element binding protein signature 142 158 IPR001471 GO:0003700|GO:0006355
Glsi03g1909 263 SUPERFAMILY DNA-binding domain 119 177 IPR016177 GO:0003677
Glsi03g1909 263 PANTHER DNA-BINDING DOMAIN 90 202 IPR044808 GO:0003700|GO:0009873
Glsi03g1909 263 ProSiteProfiles AP2/ERF domain profile. 119 176 IPR001471 GO:0003700|GO:0006355
Glsi03g1909 263 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1909 Glsi-ChrGlsi03 80692208 80692999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1909 20 198 AP2-EREBP Transcription Factor Family AT4G34410 44.860 2.92e-36 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi03g1909 AP2 3.1e-15 CL0081