Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1898 ATGCTTCAAAGCCCCTCAAACCAGCAACCTCGTAACTCGTTGGATGGCCCAGTGGCTATCCTTTGGGATATTGAAAATTGTCCAGTTCCAAGTGATGTCCGCCCCGAAGATGTGGCTGGTAATATAAGAATGGCTTTGCGGGTACACCCAGTAATTAAAGGAGCTGTTATGATGTTTTCTGCTTATGGTGATTTTAATGCCTTCCCCAGACGACTCAGAGAGGGTTGTCAGAGAACTGGTGTGAAACTCATTGATGTTCCCAACGGGAGAAAGGATGCTGCTGACAAAGCTATCTTGGTAGACATGTTCTTATTTGCCCTTGACAACCCTCCACCTTCATCTATTATGCTGATATCTGGAGACGTTGATTTTGCTCCTGCACTTCACATTCTTGGTCAACGAGGATATACTGTAATTCTTGTCATCCCCGCTAGTGTGGGTGTTTCATCTGCCCTAAGTAATGCAGGTAAATTTGTCTGGGACTGGCCTAGTGTGGCTCGTGGAGAAGGCTTTGTGCCCCCCTCAAGGGCTTTAGTGCCACATCGTGTGGGTCCAACTGAGAGCTATCATAACTCCAGGGATTTCTCAGTAGTGTCACAATCTCTGTCTGAATACAACAGTAGCACATTAAATGGGTCTTCTTTTCCGGCAACTTTGAGGTCACATAGCCTTCCATCTGGCTTGAATGATGTTTCAGGACCTATGTCTTCCAGTGACCAAAATGAATGCCCATTGTGGGTACAGCCTGGGGATTTAAATGGTCTCAAGGGCCAGCTGGTTAGGTTGCTTGCACTTTCTGGAGGATACTTGCCTCTGACCCGAGTTCCATCAGAGTACCAGAAATTTTTTGGTAGGCCTCTTTATGTATCAGAATATGGGGCATTCAAGTTGGTAAATCTTTTCAAGAAGATGGCGGACACATTGGCTGTAGAAGGGAAAGGGAATAAGAAATTTGTGTGTCTCCGGAACTGGAAAGCAAGCCCAAGTGCACCTCCTTTGGCTCTGCCACGTAAAGATAAGAAAGGAAGAGGGGTTCAGGAAGAGAATGTGGATGTTGTCACTGGTGGATGCTCTTCAGATGAGTTATCAGATGAAGACAGAGTAGTCATTGAAGAGCATGATGAGAAAAGTGGCATAGGAAAGGGTCATCAAGGTAGAGGGAGAGCAATCGGATGTGAAATTGATGACATTCTTGAGCAGTTCAAGCTTGAGCTGCAGGAGATTCTAGTTAGCTATTCTTGCCGAATATTCCTTGGTTGTTTTGAAGCGGTATACCAGCAAAGGTATAAGAAACCGCTAGACTATCAAAGATTTGGTGTGGACAAGTTGGAGGATTTGTTTGACAAAGTGAATGATGTCGTAGTGTTGCACGAAGAGCCAGTAAGCAAGAGGAAGTTCCTGGCTGCTGTGGGTGGTTAG 1419 0.4553 MLQSPSNQQPRNSLDGPVAILWDIENCPVPSDVRPEDVAGNIRMALRVHPVIKGAVMMFSAYGDFNAFPRRLREGCQRTGVKLIDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFAPALHILGQRGYTVILVIPASVGVSSALSNAGKFVWDWPSVARGEGFVPPSRALVPHRVGPTESYHNSRDFSVVSQSLSEYNSSTLNGSSFPATLRSHSLPSGLNDVSGPMSSSDQNECPLWVQPGDLNGLKGQLVRLLALSGGYLPLTRVPSEYQKFFGRPLYVSEYGAFKLVNLFKKMADTLAVEGKGNKKFVCLRNWKASPSAPPLALPRKDKKGRGVQEENVDVVTGGCSSDELSDEDRVVIEEHDEKSGIGKGHQGRGRAIGCEIDDILEQFKLELQEILVSYSCRIFLGCFEAVYQQRYKKPLDYQRFGVDKLEDLFDKVNDVVVLHEEPVSKRKFLAAVGG 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1898 472 CDD LOTUS 398 460 - -
Glsi03g1898 472 Pfam NYN domain 17 156 IPR021139 GO:0004540
Glsi03g1898 472 Gene3D - 12 163 - -
Glsi03g1898 472 ProSiteProfiles OST-type HTH domain profile. 251 323 IPR025605 -
Glsi03g1898 472 PANTHER LIMKAIN B LKAP 7 431 IPR024768 GO:0005777|GO:0010468
Glsi03g1898 472 Pfam OST-HTH/LOTUS domain 253 318 IPR025605 -
Glsi03g1898 472 Pfam OST-HTH/LOTUS domain 397 460 IPR025605 -
Glsi03g1898 472 CDD PIN_limkain_b1_N_like 17 143 - -
Glsi03g1898 472 Gene3D - 251 321 IPR041966 -
Glsi03g1898 472 Gene3D - 393 464 IPR041966 -
Glsi03g1898 472 ProSiteProfiles OST-type HTH domain profile. 397 471 IPR025605 -
Glsi03g1898 472 CDD LOTUS 252 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1898 Glsi-ChrGlsi03 80613598 80615105 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1898 14 168 C2H2 Transcription Factor Family AT5G61190 41.935 3.78e-28 116