Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1897 ATGGTCTGCGTGGTTGCCTTCTTATTTGGATCGTTGGCATTTCTCGGTATGCTGCTTCGTGCAATAATGGCCGATTGCCCTTTGGATTTTAGTGGTTCAAACTTCACACTAGCATCATCTTTATGCTCTTACCAGGGTGACAGAGGAAAGTGTTGCCGCTACATTAACGCTAACATTGCAGTTTCTGTTGCTCGTTTTGCAAATGCAACTAGAAACCTTGGAGTCACTCCAAATGCTTCTGACATCTGTCTCCAGACCATATCTCAGACCTTGCAACTTTATGGAGTTCCACGAAATGCAACAGTTTTCTGTGGTTTTGGGACAAAAATCCCAGTTAATTATGAGTGTAAGGGTCGAACTACTGTCGTGCAGATGCAGCAGTCTCCCAGATTTGTGGAGGTCACAAAAAATTGCAAAGTGCCACTTTCTGAGGAAAGTAAATGCAAGAAGTGCTTAAATGCTGGCATTGGTTACCTTCATCAAATAGGAATAGAAGATAATGTAACCCTGAGTACATGTCGTGATGCCACCTTTGCAGCCCTGGCAAGCCAAGTTGATGAGATATCTACCATTGACATCGCTAGCTGTTTCTTTGGTGTTCAAGGGCTTCTTGTGCCTCCTGAGTCAGAGCCAGCACCATCTTTGCCAACTCCTGAGGCTTCTCCAAGTCCGCTGGTTGCTCATAGCCCTAGTCAATCATTGTTAGGTGTACCTCTTAAGGGAAAGCACCATTCATATCACTTGACGCTTATTCCAAGTATTGGTATTGCCGTCACAGCTGTTGCTGCTATGATGCTCATGGTCTTGATTGTTCTAATTCGTCAGAAAAGCAGAGAGCTAGAGCAGCCTGATAATGTAGCTAAAACCTCTTCAAAATCCTTACCTCCTTGTGCAGCATGGAAATTTCAGGAAGGTCCTTCATCTATGTTTCAAAAATTCAACTACAGGGAGATAAAGAAGGCGACAGCAGATTTTAGCACCATCATTGGGCAAGGGGGATTTGGAACAGTGTATAAAGCTCACTTTAGTGATGGCCTAGTGGCAGCAGTAAAGCGAATGAACAAAGTGTCAGAGCAGGGGGAGGATGAGTTTTGCAGAGAAATAGAGCTTCTTGCTAGGTTGCATCATCGGCATCTTGTTGCTTTAAGAGGATTTTGTGTTAAAAATCATGAGAGGTTTCTAATGTACGAGTACATGGAAAATGGAAGCTTGAAAGATCATCTTCATTCCCCGGGTAGAACACCTCTAAGTTGGCGAACTAGAATCCAAATTGCCATTGATGTGGCTAATGCACTGGAGTACCTTCATTTTTATTGTGATCCTCCTCTGTGGCATAGAGACATAAAGTCTAGCAACATTTTACTGGATGAGAATTTTGTTGCTAAGTTAGCTGATTTTGGCCTTGCACATGCTTCAAAAGATGGTTCTATATGCTTGGAAGCTGTAAACACTGATATCCGGGGAACTCCAGGTTATATGGATCCTGAATATGTGGTTACTCAAGAGCTCACTGAGAAAAGCGATATATACAGTTTTGGGGTGCTATTATTGGAAATAGTAACTGGAAGAAGAGCAATTCAAGATAATAAGAATTTGATAGAATGGGCACAACCATACATGGGACCAGAAACAAGGTTGATGGAGCTAGTGGACCCCAATGTCAGGGAGTCTTTTGACTTGGATCAGCTCCAGACAGTAGTGTCTATAGTAGAATGGTGCACCCAGAGAGAAGGCAGGACAAGGCCTTCAATAAAACAAGTCCTTAGGCTTCTGTATGAGACTTCAGAACCTATGGACAGTGGGTTTCTACAAGCTGTTGAAGATGAAGAATGTGAAGGAAACGAGCAGAGGGGCAGAAGCAGCAAGGGGAAAATACACAGAAATGAAGCATTTTTTCACAGCGGGGATGGAAGATACCTCGCTTCTTCTTCAAGTACCTCTCGGTCCTTTTGCAGTAGAAGCTTTTTGCTTGAGCCAAGCTCCCCACAGTCTCCTTCAAATATATTCTCCGTCTAA 2016 0.4325 MVCVVAFLFGSLAFLGMLLRAIMADCPLDFSGSNFTLASSLCSYQGDRGKCCRYINANIAVSVARFANATRNLGVTPNASDICLQTISQTLQLYGVPRNATVFCGFGTKIPVNYECKGRTTVVQMQQSPRFVEVTKNCKVPLSEESKCKKCLNAGIGYLHQIGIEDNVTLSTCRDATFAALASQVDEISTIDIASCFFGVQGLLVPPESEPAPSLPTPEASPSPLVAHSPSQSLLGVPLKGKHHSYHLTLIPSIGIAVTAVAAMMLMVLIVLIRQKSRELEQPDNVAKTSSKSLPPCAAWKFQEGPSSMFQKFNYREIKKATADFSTIIGQGGFGTVYKAHFSDGLVAAVKRMNKVSEQGEDEFCREIELLARLHHRHLVALRGFCVKNHERFLMYEYMENGSLKDHLHSPGRTPLSWRTRIQIAIDVANALEYLHFYCDPPLWHRDIKSSNILLDENFVAKLADFGLAHASKDGSICLEAVNTDIRGTPGYMDPEYVVTQELTEKSDIYSFGVLLLEIVTGRRAIQDNKNLIEWAQPYMGPETRLMELVDPNVRESFDLDQLQTVVSIVEWCTQREGRTRPSIKQVLRLLYETSEPMDSGFLQAVEDEECEGNEQRGRSSKGKIHRNEAFFHSGDGRYLASSSSTSRSFCSRSFLLEPSSPQSPSNIFSV 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1897 671 PANTHER OS01G0750732 PROTEIN 164 618 - -
Glsi03g1897 671 Pfam Protein kinase domain 327 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1897 671 Gene3D Transferase(Phosphotransferase) domain 1 399 611 - -
Glsi03g1897 671 Pfam SPARK 24 168 IPR043891 -
Glsi03g1897 671 SUPERFAMILY Protein kinase-like (PK-like) 306 594 IPR011009 -
Glsi03g1897 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 443 455 IPR008271 GO:0004672|GO:0006468
Glsi03g1897 671 CDD STKc_IRAK 329 591 - -
Glsi03g1897 671 FunFam Putative receptor-like protein kinase 399 599 - -
Glsi03g1897 671 ProSitePatterns Protein kinases ATP-binding region signature. 329 351 IPR017441 GO:0005524
Glsi03g1897 671 SMART serkin_6 323 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1897 671 FunFam Putative receptor-like protein kinase 291 398 - -
Glsi03g1897 671 Gene3D Phosphorylase Kinase; domain 1 293 398 - -
Glsi03g1897 671 ProSiteProfiles Protein kinase domain profile. 323 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1897 Glsi-ChrGlsi03 80608514 80612690 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1897 24 670 Receptor kinase-like Gene Family AT3G19300 60.369 0.0 763
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-1 Glsi03g1897 Pkinase 5.3e-50 CL0016