Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1895 ATGCCTGGGAGCTTAGAGCCGTTAGATTTGGGAGTTCAGATTCCATACCACTTCAGGTGTCCGATCTCCCTCGAGTTGATGCGTGACCCGGTTACAGTCTGCACCGGTCAGACCTACGATCGAGCCAGCATTGAGTCGTGGGTTGCAACCGGCAACACCACCTGCCCTGTCACTCGGGCTCCTCTCACCGACTTCACTCTTATTCCCAACCATACTCTTCGCCGCCTCATCCAAGACTGGTGCGTCGCTAACCGGGCTTTCGGAGTTGAGCGTATTCCCACTCCCAAACAACCAGCAGACCCCACCTTGGTCCGTTCCTTGTTGAATCAAGCCTCCTCCGAGTCAGCTTCGACTCATTCCCGCCTCTCCGCTTTACGGCGACTCAGAGGACTCGCTCGTGACTCGGACAAGAATCGTTCTCTCATTGGCTCTCACAACGTACGCGAAATCCTTCTTCATATTGTTTTCTCCAATCCCGGTTCTGCTTCTTCTGATTTGAATCACGAGTCACTCGCTTTACTGGTGATGTTTCCACTTGCCGAGTCGGAATGCACGTCCGTGGCATCTGACATGGATAGAATCCACTACTTATCGCGTCTTCTATTCCACTCATCCATGGACGTCCGAGTCAACTCGGCCGCGCTTATCGAAATCGTGGTGGCTGGAACTCGTTTGCCGGAGCTCCGGGCACAAATAAGCAGTATTGACGAAATCTACGACGGAGTCATTGACATTTTGAAGAATCCAATTGCGTATCCTCGCCCTCTCAAGATTGGTATAAAGGCCTTATTTGCTTTGTGCTTGGTAAAACAGACACGGCATAAAGCTGTCGTAGCCGGAGCACCGGAGATTCTCATCGACCGGCTAGCCGATTTGGAGAAATGCGACGCAGAAAGGGCTCTAGCGACGATCGAATTGCTCTGTCGAATTCCGGCGGGGTGCGTCGCATTTGCAGGACACGCTCTGACGGTACCACTGTTGGTGAAAATAATACTGAAGATATCAGACCGGGCGACGGAGTATGCAGCCGGAGCACTGCTATCGCTGTGCTCGGAATCGGAGCAGAGCAAGAGAGAGGCGGTGGCGGCGGGCGTGTTGACTCAGCTGCTGTTACTGGTACAGAGTGAGTGCACGGAGAGAGCGAAGAGGAAGGCGCAGCTGTTGCTGAAACTTCTTCGGGATTCGTGGCCTCAAGATTCCATTGGAAATTCTGATGATTTTGCATGCAGCGAAGTTGTAGTACCGTTTTGA 1251 0.5276 MPGSLEPLDLGVQIPYHFRCPISLELMRDPVTVCTGQTYDRASIESWVATGNTTCPVTRAPLTDFTLIPNHTLRRLIQDWCVANRAFGVERIPTPKQPADPTLVRSLLNQASSESASTHSRLSALRRLRGLARDSDKNRSLIGSHNVREILLHIVFSNPGSASSDLNHESLALLVMFPLAESECTSVASDMDRIHYLSRLLFHSSMDVRVNSAALIEIVVAGTRLPELRAQISSIDEIYDGVIDILKNPIAYPRPLKIGIKALFALCLVKQTRHKAVVAGAPEILIDRLADLEKCDAERALATIELLCRIPAGCVAFAGHALTVPLLVKIILKISDRATEYAAGALLSLCSESEQSKREAVAAGVLTQLLLLVQSECTERAKRKAQLLLKLLRDSWPQDSIGNSDDFACSEVVVPF 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1895 416 PANTHER WDSAM1 PROTEIN 12 398 IPR045185 GO:0061630
Glsi03g1895 416 FunFam RING-type E3 ubiquitin transferase 8 90 - -
Glsi03g1895 416 SUPERFAMILY RING/U-box 12 90 - -
Glsi03g1895 416 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Glsi03g1895 416 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
Glsi03g1895 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
Glsi03g1895 416 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Glsi03g1895 416 Gene3D - 314 416 IPR011989 -
Glsi03g1895 416 CDD RING-Ubox_PUB 15 67 IPR045210 -
Glsi03g1895 416 Gene3D - 103 313 IPR011989 -
Glsi03g1895 416 SUPERFAMILY ARM repeat 103 392 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1895 Glsi-ChrGlsi03 80593079 80594329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1895 1 416 U-box Gene Family AT3G19380 69.267 0.0 566