Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1894 ATGTCTGAGGAAGAGGACAACCATCAGCAGGAGATGGGGTTCTTGTGGGAAAACCAGTCATGGGGTCTCACCAATTCTGATAACTCGGGCGAAAGCAAAGAGAAATCAAGCATCAACCCACCACCCAAAACAACCTCTTCTAATAATGACAACCTCCCCAAACAACAAACAAATGATCCTGAAGGAGATGCCTTGGGAAAGTCGTCGAGGCGAAGCCGAGGAAAGAGGATCTCTGCTAGTACTGGGGAATTAGGGAAAGATGGAAAAGGTGGCGAATCTGATGATCATGAAATACATATATGGACTGAGAGAGAGAGGAGGAAGAAGATGAGGAACATGTTCGCTAGTCTTCATGCTTTGCTTCCTCAGCTTCCTTCTAAGGCTGACAAATCAACCATCGTTGACGAAGCGGTGAACTACATAAAAAGCCTACAGAACACTCTGCAGAAGCTACAAAAACAAAAGCTGGAAAGGCTCCAATCTGTGTCCACTACTTTTGGGTATGAGGCATCAGCGATGATGAACTCGCAGTGGCATCCCTGTGAGTCAAGGGAGGCATTTATAGCTGATCAGGGACCTATTGCCATTAATGGAACTTCAAATGCTTCAACTTCATTAGTTTCATCTGTTCCTCGGAACCCAGTAGTAGGGTTTCAGACCTGGTGTTCTTCAAATCTAGTCTTGAACATTTGTGGTGATGAAGCTCAATTCAGTGTGTGCTCATCCAAGAAGCCAGGCCTCTTCACTGCCATCTGTTTTGTGCTGGAGAAGCACAAGATTGAGGTTTTATCTGCCCATGTTTCATCTGATAATAATCGAAGCATATACATGATTCAAGCACAGGCAAATAGAGCTCCAAATCAGTTTCCAGAGGCATTTTCCGTGGAAGAAATATTCAGGCAAGCAGCTGGAGAAATTATGCTATGGCTATCATAA 936 0.4444 MSEEEDNHQQEMGFLWENQSWGLTNSDNSGESKEKSSINPPPKTTSSNNDNLPKQQTNDPEGDALGKSSRRSRGKRISASTGELGKDGKGGESDDHEIHIWTERERRKKMRNMFASLHALLPQLPSKADKSTIVDEAVNYIKSLQNTLQKLQKQKLERLQSVSTTFGYEASAMMNSQWHPCESREAFIADQGPIAINGTSNASTSLVSSVPRNPVVGFQTWCSSNLVLNICGDEAQFSVCSSKKPGLFTAICFVLEKHKIEVLSAHVSSDNNRSIYMIQAQANRAPNQFPEAFSVEEIFRQAAGEIMLWLS 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1894 311 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 94 144 IPR011598 GO:0046983
Glsi03g1894 311 SMART finulus 102 150 IPR011598 GO:0046983
Glsi03g1894 311 Pfam Helix-loop-helix DNA-binding domain 102 145 IPR011598 GO:0046983
Glsi03g1894 311 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 2 310 IPR044278 GO:0003700|GO:0006355|GO:0009960
Glsi03g1894 311 Coils Coil 134 161 - -
Glsi03g1894 311 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 92 156 IPR036638 GO:0046983
Glsi03g1894 311 CDD ACT_UUR-ACR-like 236 285 - -
Glsi03g1894 311 MobiDBLite consensus disorder prediction 12 63 - -
Glsi03g1894 311 MobiDBLite consensus disorder prediction 64 99 - -
Glsi03g1894 311 CDD bHLH_AtbHLH_like 99 152 IPR045239 -
Glsi03g1894 311 MobiDBLite consensus disorder prediction 1 99 - -
Glsi03g1894 311 Gene3D - 90 161 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1894 Glsi-ChrGlsi03 80587628 80590763 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1894 10 311 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 41.896 7.54e-67 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi03g1894 HLH 7.7e-11 No_clan