Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1893 ATGCAAGGTCAAAGAAGGACTGTTGGGTCCTTCCCAGCAATTGTTAGTATGATGCAGGGGCCTAGTGCTAGTGGCACTGATATGAATGGGCAGACTTCCCTGAATCATGTGCAAAATGCAGTAGATACCCGATTTTCAGATTATATGGGATCTTCTGGTGAGACAGCATGTTTACTTGCTACTAATCCTGATGTTCAGAGCTTCAGTGGCTGGAATACTGGTGAAACGAGTTCTAGACTGGATCTGCACAACCAAGTCAGTAATGATGGGCTTAAAACAGAACATGGTTGGTCTTCTTCTAGTAGTGCTCCTGCTGAGGGACCAGAAGAAAGGCGATTTGAACCAAATAATGTAATCTCGCCTTTTAGTTCAAATACTAATTTACATGGGAATCAATCCAGTACTCAACCTCACTCTTCACAAGGTTCAAGCACCAATCATATAACCTCGAATGTGAATGTAAACATGGGGCACATTGCCAATACTGCTAATCGTGGGAAGGGAACCGAAACTGGTGGAGGTGTTAATATCCACAATGCCGGTGGATCAGATAGAGGGCATAAATCATTTGGCAGTGCTTCATGTGATTATATAGGAACTTCATCCAGAAGCTCTGGTCACATGGTTTGGGGAGATAGTGCCAGTTCTAGTTCTTCTTTAGTAAATTGGGGTTCTTCCTGCAAGAGAAAAGCCTTTGAAGATAGTTCTGGGCCACAGTGTACTGGAGAAAGCTCAAGCACTTTTGTAGAATCTGAAAACAGCTTCTGGCCTACTGGTCCTGCTCTAAATGCTTCCAGCAGTTTAAGTGTTTCAGCACCTTCAGAGGATGCTCCTCTTACTACTCCATTACAGCATAACCGAAGAAGTGAGGTTTGGCAAGCTGCTTCTGAGGCATTCCCCTTGATAAGTGTTGTGGGAAATGTGGAAAGGCCTCTAAGAAGCTTTGATAGGAGTATAACCCATGTACAGCGTCAGGAATCTATACCTTTGAATTTATCATCAACAGGGAGATCTAGGCATTCTAATCACTCTTCTGTCCACCAAATATCTGGCTCTAATCCATTTAATGATTCTCTGGAATTGAGGTTAACAGCTGGAATAACAGCAGCCAATTCTGTTGCTCCTCAGAACCAGTCGCTTCCCCTGCATGTGCCTGGTTTTTCAGGGAACACACATCCTTTTCCTTGGAATGGAGCTGCCAATCTAAGAGGGGCCACTTCATCAACTTCTTATAACTCTGGAGAAAGAGCAGTGCGGGAAGAACTAAACTTAAGGATCCTCCAGGGAGACAGTACTCAGCACCCCATGCATGTGCTTGCGTCTTCAGGACATGACCCTACAAGTTGGCATATGTCCTCTGGTAATGTGAACAATTCTGGAGCTCTACCCCCCACATCATGGATTGGATCTAGTCCAAGTGTCCATTCATTGCCTAATCCTAGATGGATTGTTAACCATGAAGTCCCAATGCAGAATCTGCAAAGATTATCAGAGTTCAATCCTTGGTCCCTTTTCCCATCTGGTGTTCATAATGGCCACTCTACCTCATCGCTTTCTGGCCATCCTGCCTCTACTCAGGATACTAGCAACCACCAACCATATGCTAGATCAGCATCATCGATGGGGAGAAGGGGTGATGATGTTTTCAGTGCGCCCCATTCATTGCAAACTTTTGCTGTTGACATTGAGGGGAGACGCCGACTAATATCTGAGATTCGCCAAGTCTTGAATGCAATGCGCAGGGGTGAGAACTTACAAGCTGAGGATCATTTGCTTTTTGACCCTTTCATATTTCATGGTATGGCTGAAATGCATGACAGGCACAGAGATATGCGCCTTGATGTTGATAACATGTCTTATGAGGAATTGTTGGCATTAGAGGAGCGCATAGGAGATGTGAACACTGGATTAAATGAGGATATCATTATGAAGTTGATGAAACAACGAATATATGTCTATATCATGACAGAGTCGTCTACAGATCTGGAACCTTGCTGTATCTGTCAGGAGGAATATGCTGATGGAGAAGACGTTGGTTCACTAGATTGTGGGCATGAATTCCACATCAACTGCATCAAGCTGTGGCTAATGCAGAAGAATCTTTGCCCCATTTGCAAAACAACAGCTTTAGCTACATGA 2139 0.4413 MQGQRRTVGSFPAIVSMMQGPSASGTDMNGQTSLNHVQNAVDTRFSDYMGSSGETACLLATNPDVQSFSGWNTGETSSRLDLHNQVSNDGLKTEHGWSSSSSAPAEGPEERRFEPNNVISPFSSNTNLHGNQSSTQPHSSQGSSTNHITSNVNVNMGHIANTANRGKGTETGGGVNIHNAGGSDRGHKSFGSASCDYIGTSSRSSGHMVWGDSASSSSSLVNWGSSCKRKAFEDSSGPQCTGESSSTFVESENSFWPTGPALNASSSLSVSAPSEDAPLTTPLQHNRRSEVWQAASEAFPLISVVGNVERPLRSFDRSITHVQRQESIPLNLSSTGRSRHSNHSSVHQISGSNPFNDSLELRLTAGITAANSVAPQNQSLPLHVPGFSGNTHPFPWNGAANLRGATSSTSYNSGERAVREELNLRILQGDSTQHPMHVLASSGHDPTSWHMSSGNVNNSGALPPTSWIGSSPSVHSLPNPRWIVNHEVPMQNLQRLSEFNPWSLFPSGVHNGHSTSSLSGHPASTQDTSNHQPYARSASSMGRRGDDVFSAPHSLQTFAVDIEGRRRLISEIRQVLNAMRRGENLQAEDHLLFDPFIFHGMAEMHDRHRDMRLDVDNMSYEELLALEERIGDVNTGLNEDIIMKLMKQRIYVYIMTESSTDLEPCCICQEEYADGEDVGSLDCGHEFHINCIKLWLMQKNLCPICKTTALAT 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1893 712 MobiDBLite consensus disorder prediction 231 253 - -
Glsi03g1893 712 MobiDBLite consensus disorder prediction 237 253 - -
Glsi03g1893 712 MobiDBLite consensus disorder prediction 512 546 - -
Glsi03g1893 712 MobiDBLite consensus disorder prediction 332 353 - -
Glsi03g1893 712 Pfam Ring finger domain 665 706 IPR001841 -
Glsi03g1893 712 MobiDBLite consensus disorder prediction 512 537 - -
Glsi03g1893 712 MobiDBLite consensus disorder prediction 88 105 - -
Glsi03g1893 712 FunFam E3 ubiquitin-protein ligase MBR2 632 710 - -
Glsi03g1893 712 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 629 710 IPR013083 -
Glsi03g1893 712 ProSiteProfiles Zinc finger RING-type profile. 665 706 IPR001841 -
Glsi03g1893 712 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 223 710 IPR045191 GO:0061630
Glsi03g1893 712 MobiDBLite consensus disorder prediction 117 169 - -
Glsi03g1893 712 SMART ring_2 665 705 IPR001841 -
Glsi03g1893 712 MobiDBLite consensus disorder prediction 88 188 - -
Glsi03g1893 712 SUPERFAMILY RING/U-box 645 709 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1893 Glsi-ChrGlsi03 80581597 80584946 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1893 1 712 C3H Transcription Factor Family AT2G15530 34.367 9.14e-104 331