Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1889 ATGGCCCAACCGCAGCAAGCTCTTGAACAGGTTCAGTGCTTCGGCCGCAAGAAGACCGCGGTGGCCGTTACTTACTGTAAACGCGGCCGTGGACTGATCAAGATCAATGGCTGCCCAATTGAACTTGTGGAACCGGAGATCCTCCGATTCAAGGCCTTCGAACCCATCCTCCTCTTGGGCAAACACCGTTTTGCCGGCGTCGACATGCGCATCCGGGTCAAGGGTGGTGGGCACACCTCGCAGATATACGCTATTCGCCAGAGCATAGCCAAGGCCCTCGTTGCTTTCTACCAGAAGTACGTGGACGAACAGAGCAAGAAGGAGATCAAAGACATACTAGTCAGGTACGACAGAACCCTGCTTGTCGCTGATCCAAGGCGCTGCGAGCCCAAGAAGTTCGGCGGTCGTGGTGCTCGCGCTAGGTTCCAGAAATCGGTTTGTTCTGATAATACCCAGTTAATTTCGCTGTTGTCACATGATGACATGAACTCCCTCTCCCCCGCCCTCATTGGGACCCACATGATGTGCAATTGTGTAGGGCTGTGTACTATAATGTTCAAGGCCTTCGAACCCATCCTCTTCTTGGGCAAACACCGTTTTGCCGGCGTCGACATGCGCATCCGGGTCAAGGGTGGTGGGCGCACCTCACAGATATACGCTATTCGCCAGAGCATGGCCAAAGCCCTCGTTGCTTTCTACCAGGAGTACGTGGATGAGCAGAGCAAGAAGGAGATTAAAGATATCCTGGTCAGTGGTGCTCGCGCTAGTTTCCAGAAATCATACCGTTGA 789 0.5374 MAQPQQALEQVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGKHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSVCSDNTQLISLLSHDDMNSLSPALIGTHMMCNCVGLCTIMFKAFEPILFLGKHRFAGVDMRIRVKGGGRTSQIYAIRQSMAKALVAFYQEYVDEQSKKEIKDILVSGARASFQKSYR 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1889 262 PANTHER RIBOSOMAL PROTEIN S9 186 259 IPR000754 GO:0003735|GO:0005840|GO:0006412
Glsi03g1889 262 Gene3D - 2 146 IPR014721 -
Glsi03g1889 262 Gene3D - 181 262 IPR014721 -
Glsi03g1889 262 SUPERFAMILY Ribosomal protein S5 domain 2-like 180 262 IPR020568 -
Glsi03g1889 262 ProSitePatterns Ribosomal protein S9 signature. 75 93 IPR020574 GO:0003735|GO:0005840|GO:0006412
Glsi03g1889 262 ProSitePatterns Ribosomal protein S9 signature. 211 229 IPR020574 GO:0003735|GO:0005840|GO:0006412
Glsi03g1889 262 SUPERFAMILY Ribosomal protein S5 domain 2-like 10 145 IPR020568 -
Glsi03g1889 262 FunFam 40S ribosomal protein S16 3 147 - -
Glsi03g1889 262 Pfam Ribosomal protein S9/S16 15 145 IPR000754 GO:0003735|GO:0005840|GO:0006412
Glsi03g1889 262 Pfam Ribosomal protein S9/S16 187 249 IPR000754 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1889 Glsi-ChrGlsi03 80569501 80571044 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1889 184 262 Cytoplasmic Ribosomal Protein Gene Family AT2G09990 64.000 2.30e-35 122