Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1886 ATGGCTCAGGTTCAGCCTCAGAATGCGGCACCGGGGGCTAACGGTGCTACGGCGACGGGCGGGGCGAGTCAGTTCGGGGCGTCCTCGCTTTATGTTGGAGATCTTGACCAGAACGTCACGGATTCGCAGCTATATGACCTGTTTAACCAAGTGGGTCAGGTCGTGTCTGTTAGGGTTTGTAGGGATTTGAGCACCCGAAGATCACTTGGTTATGGTTATGTCAATTTTGGCAACCCGCAAGATGCTGCCAGAGCATTGGATATGCTGAACTTCACTCCTCTCAATAACAGGCCCATTCGTGTCATGTATTCACATCGAGATCCCAGCATCCGCAAAAGTGGGGCAGGAAACATATTTATTAAGAATTTGGACAAAGCAATTGACCACAAAGCATTACATGATACTTTTTCTGCATTTGGCAATATCCTTTCTTGCAAGGTAGCTACAGACTCATCTGGCCAATCAAAAGGCTATGGCTTTGTACAATTTGATAATGAGGAATCTGCTCAAAAAGCCATAGAGAAGCTAAATGGTATGTTGTTGAATGATAAACAAGTGTATGTGGGACCCTTCCTTCGTAGGCAAGAAAGAGATAGTTCTGTTGACAAGACAAAATTCAACAATGTTTTTGTAAAGAACCTGTCAGAATCAACCACTGATGAAGATTTGAAGATAATTTTTGGTGAATTTGGAACAATTACTAGTGCTGTTGTGATGAGGGATGGGGATGGAAAGTCAAAGTGCTTTGGATTTGTAAACTTTGAGAATGCTGATGATGCTGCTAGGGCTGTTGAGGCCCTTAATGGGAAAAAAATTGATGACAAGGAATGGTATGTTGGAAAAGCTCAAAAGAAATCTGAAAGGGAACTTGAATTGAAACTTAGGTTTGAGCAGAGCATGAAAGAAGCAGCTGATAAATTTCAAGGGGCTAACTTGTATGTTAAAAATCTAGATGATAGCATTAGTGATGATAAACTTAAGGATCTCTTCTCCCCATATGGTACCATTACCTCATGCAAGGTTATGCGAGACCCCAATGGAATAAGTCGAGGATCAGGGTTTGTTGCATTCTCAACTCCAGAGGAGGCATCTAGAGCTCTGTTGGAGATGAATGGAAAAATGGTGGTAAACAAACCTCTGTATGTTGCTCTAGCTCAACGCAAAGAAGATAGAAGAGCTAGATTGCAGGCTCAATTTTCTCAAATGCGGCCTGTTCCAATGGCACCTTCTGTTCCTCCTCGTTTGCCAATGTACCCTCCTGGTGGTCCAGGTATTGGACAACAAATATTTTATGGTCAAGGTCCTCCTGCTATCATTCCTTCCCAGCCTGGATTTGGGTATCAACAACAACTAGTACCTGGTATGAGGCCTGGTGGGGCTCCTATGCCAAATTTCTTTGTGCCAATGGTTCAGCAGGGGCAACAGGGGCAGCGTCCTGGAGGAAGACGTGGAGGGGCAGTCCAGCAGACCCAGCAGCCAGTTCCACTCATGCCACAGCAGATGCTTCCAAGGGGACGTGTCTACCGCTATCCTCCTGGTAGGGGTCTGCCTGATGTTCCCATGCCTGGGGTCGCTGGAGGCATGTTTTCTGTTCCATATGATGTGGGTGGAATGCCACTGCGTGATGCAGCAATATCCCAGCAAATTCCTATAGGGGCTTTGGCTTCTGCCCTGGCAAATGCTACTCCAGAGCAGCAGAGGACGATGCTGGGTGAGAATCTTTATCCACTTGTGGAACAGTTGGAGCCTGATAATGCAGCTAAAGTGACTGGCATGCTTCTGGAGATGGATCAGACTGAGGTTCTACACTTGCTTGAATCACCAGATGCTCTGAAAGCAAAGGTGGCTGAGGCAATGGATGTCCTAAGGAATGTTGCTCAGCAGCAGCAGGCTGGCGGAGCTGATCAGCTGGCATCATTATCACTTAATGACAACCTTGTTTCTTGA 1947 0.4612 MAQVQPQNAAPGANGATATGGASQFGASSLYVGDLDQNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNFGNPQDAARALDMLNFTPLNNRPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSSVDKTKFNNVFVKNLSESTTDEDLKIIFGEFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALNGKKIDDKEWYVGKAQKKSERELELKLRFEQSMKEAADKFQGANLYVKNLDDSISDDKLKDLFSPYGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVNKPLYVALAQRKEDRRARLQAQFSQMRPVPMAPSVPPRLPMYPPGGPGIGQQIFYGQGPPAIIPSQPGFGYQQQLVPGMRPGGAPMPNFFVPMVQQGQQGQRPGGRRGGAVQQTQQPVPLMPQQMLPRGRVYRYPPGRGLPDVPMPGVAGGMFSVPYDVGGMPLRDAAISQQIPIGALASALANATPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRNVAQQQQAGGADQLASLSLNDNLVS 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1886 648 Pfam Poly-adenylate binding protein, unique domain 558 622 IPR002004 GO:0003723
Glsi03g1886 648 CDD RRM3_I_PABPs 206 285 - -
Glsi03g1886 648 Gene3D - 546 629 - -
Glsi03g1886 648 SUPERFAMILY PABC (PABP) domain 491 637 IPR036053 GO:0003723
Glsi03g1886 648 SMART poly_2 562 625 IPR002004 GO:0003723
Glsi03g1886 648 CDD RRM4_I_PABPs 309 387 - -
Glsi03g1886 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 284 IPR000504 GO:0003723
Glsi03g1886 648 Gene3D - 117 189 IPR012677 -
Glsi03g1886 648 FunFam Polyadenylate-binding protein 293 398 - -
Glsi03g1886 648 CDD RRM2_I_PABPs 114 190 IPR045305 -
Glsi03g1886 648 PANTHER RNA BINDING PROTEIN 26 90 - -
Glsi03g1886 648 SMART rrm2_1 208 280 IPR003954 GO:0003676
Glsi03g1886 648 SMART rrm2_1 311 383 IPR003954 GO:0003676
Glsi03g1886 648 SMART rrm2_1 29 102 IPR003954 GO:0003676
Glsi03g1886 648 SMART rrm2_1 117 189 IPR003954 GO:0003676
Glsi03g1886 648 SUPERFAMILY RNA-binding domain, RBD 29 196 IPR035979 GO:0003676
Glsi03g1886 648 CDD RRM1_I_PABPs 29 108 IPR034364 -
Glsi03g1886 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 387 IPR000504 GO:0003723
Glsi03g1886 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 188 IPR000504 GO:0003723
Glsi03g1886 648 SUPERFAMILY RNA-binding domain, RBD 200 290 IPR035979 GO:0003676
Glsi03g1886 648 FunFam Polyadenylate-binding protein 15 113 - -
Glsi03g1886 648 MobiDBLite consensus disorder prediction 472 492 - -
Glsi03g1886 648 FunFam Polyadenylate-binding protein 546 628 - -
Glsi03g1886 648 Gene3D - 192 293 IPR012677 -
Glsi03g1886 648 Gene3D - 294 400 IPR012677 -
Glsi03g1886 648 Gene3D - 1 116 IPR012677 -
Glsi03g1886 648 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 28 623 IPR006515 GO:0003723
Glsi03g1886 648 FunFam Polyadenylate-binding protein 198 292 - -
Glsi03g1886 648 SMART rrm1_1 311 383 IPR000504 GO:0003723
Glsi03g1886 648 SMART rrm1_1 29 102 IPR000504 GO:0003723
Glsi03g1886 648 SMART rrm1_1 208 280 IPR000504 GO:0003723
Glsi03g1886 648 SMART rrm1_1 117 189 IPR000504 GO:0003723
Glsi03g1886 648 FunFam Polyadenylate-binding protein 114 197 - -
Glsi03g1886 648 SUPERFAMILY RNA-binding domain, RBD 307 404 IPR035979 GO:0003676
Glsi03g1886 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 106 IPR000504 GO:0003723
Glsi03g1886 648 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 186 IPR000504 GO:0003723
Glsi03g1886 648 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 312 380 IPR000504 GO:0003723
Glsi03g1886 648 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 30 100 IPR000504 GO:0003723
Glsi03g1886 648 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 277 IPR000504 GO:0003723
Glsi03g1886 648 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 550 627 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1886 Glsi-ChrGlsi03 80554732 80559043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1886 1 643 Eukaryotic Initiation Factors Gene Family AT4G34110 73.628 0.0 924