LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi03g1861	ATGAATCAAGATTCGGCAATGGAGGCGCTGCAGAGAGATTTGGATCGGGTCAAGGGTCCATGGAGCCCAGAGGAGGACGAGTTGTTGCACAAGCTCGTGCAACGGTACGGCCCTCGGAATTGGTCCATCATAAGCAAATCGATCCCTGGACGGTCTGGGAAGTCGTGTCGCCTCCGCTGGTGCAACCAGCTCTCGCCGGACGTGGAGCATCGGGCCTTCACCCCCGAGGAGGACAAGATCATCATCGAGGCCCACTCCAAGTTCGGCAACAAGTGGGCCACCATAGCCAGGCTCCTAAACGGTCGTACGGACAACGCGATCAAGAACCATTGGAACTCGACTTTGAAGCGCAAGTACTCGTCGTTCATCGCCGACGAAGGCGCAACCGTCGATGAGCCGTCGTTGCCACCGGAGAAAAAGGCGGCCACTGGAGATCGCGCCGCGCCGAAGCCGTCATTCTCAGGGGGCCATTGTTACAGCCCAAGCAGTCCATCTGGATCTGATGTGAGCGATTCAGGCCAACCTGTAGTGTCATCTTCGACGGTGATTCGACCTGTAGCGAGAACTGGCGCAATCTTGCCGCCTTCCCAGCAGGTGGAGTCACGCCCGAGTCCTATCTTTAAGTTTAACAAGGAGCCTTGCACTGAACTCACTCTGTCCCTTTTTGGAGCCGAGCCGCACGAGTTGCAGGTGCTTCAAAACTCAGGTTCTAGTAATACAGAGCATGGTAAAGGATCATGGGCGCCAAAGCCGGCTGAGAAGTTGTCATCAATGGCGACGTTTGGGCCTGAGTTACTGATGGTGATGAAGGAAATGATAAGGGATGAGGTGAAAAATTACATGGCAGGGTTTGATGATAAGCATCGAAGCACAAAAGAACCCGGAGAATGA	891	0.5466	MNQDSAMEALQRDLDRVKGPWSPEEDELLHKLVQRYGPRNWSIISKSIPGRSGKSCRLRWCNQLSPDVEHRAFTPEEDKIIIEAHSKFGNKWATIARLLNGRTDNAIKNHWNSTLKRKYSSFIADEGATVDEPSLPPEKKAATGDRAAPKPSFSGGHCYSPSSPSGSDVSDSGQPVVSSSTVIRPVARTGAILPPSQQVESRPSPIFKFNKEPCTELTLSLFGAEPHELQVLQNSGSSNTEHGKGSWAPKPAEKLSSMATFGPELLMVMKEMIRDEVKNYMAGFDDKHRSTKEPGE	296

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi03g1861	296	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	13	68	IPR017930	-
	Glsi03g1861	296	MobiDBLite	consensus disorder prediction	234	255	-	-
	Glsi03g1861	296	MobiDBLite	consensus disorder prediction	156	181	-	-
	Glsi03g1861	296	FunFam	Transcription factor MYB44	72	118	-	-
	Glsi03g1861	296	Pfam	Myb-like DNA-binding domain	72	114	IPR001005	-
	Glsi03g1861	296	Pfam	Myb-like DNA-binding domain	18	64	IPR001005	-
	Glsi03g1861	296	SUPERFAMILY	Homeodomain-like	15	111	IPR009057	-
	Glsi03g1861	296	FunFam	MYB transcription factor	18	69	-	-
	Glsi03g1861	296	CDD	SANT	72	115	IPR001005	-
	Glsi03g1861	296	SMART	sant	69	117	IPR001005	-
	Glsi03g1861	296	SMART	sant	17	66	IPR001005	-
	Glsi03g1861	296	ProSiteProfiles	Myb-like domain profile.	65	115	IPR001005	-
	Glsi03g1861	296	Gene3D	-	72	118	-	-
	Glsi03g1861	296	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	70	119	IPR017930	-
	Glsi03g1861	296	MobiDBLite	consensus disorder prediction	128	181	-	-
	Glsi03g1861	296	ProSiteProfiles	Myb-like domain profile.	13	64	IPR001005	-
	Glsi03g1861	296	PANTHER	MYB PROTEIN-RELATED	18	172	-	-
	Glsi03g1861	296	CDD	SANT	20	62	IPR001005	-
	Glsi03g1861	296	Gene3D	-	17	69	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi03g1861	Glsi-ChrGlsi03	80344242	80345132	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi03g1861	15	282	MYB Transcription Factor Family	AT5G67300	48.592	3.38e-77	236

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Glsi03g1861		Myb_DNA-binding	1e-16	CL0123