Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1858 ATGCATTCCCCCATCCCCACTTATCAAAGCCAACTTTGTCGTGTCGTTCTATCTTGGCTCTTCATTCCTTTTTCATTCCTGTTCCTTCGCCCCTTTTCGTTGAGGAGCAGTATGGGTAGCCTTGAGGAGGAAAAAACGACGATAGGATGGGCAGCCAGAGACCCATCTGGGATTCTCTCGCCATACACATTCCCTCTAAGAAACACAGGCCCGGAAGATGTGTACATCAAGGTTCACTACTGTGGAGTTTGCCATTCTGATCTGCATCAAATTAAGAACGATCTTGGCATGTCAAATTATCCTATGGTTCCTGGGCATGAAGTAGTAGGCGAGGTGCTCGAGGTGGGTTCGAATGTAACCAAATTCAAAGTAGGACAAGTAGTAGGAGCCGGACTCATCGTTGGAAGCTGCAGAAATTGCAGGTCATGCCAATCTGATATAGAGCAATACTGCAGCAAGAAGATCTGGTCCTACAACGACGTCTATACTGATGGGAAGCCCACGCAAGGTGGCTTTGCCGAAACGATGGTCGTCGACCAAAAGTTTGTAGTGACAATACCAGACGGTTTGGCGCCGGAGCAAGTTGCACCATTATTGTGTGCAGGCGTGACAGTGTATAGTCCATTAGCACACTTCGGGTTGAAGGAAAGTGGGCTTAGAGGAGGAATATTGGGGCTTGGAGGAGTGGGACATATGGGGGTGAAGATAGCAAAGGCAATGGGTCACCATGTGACAGTGATAAGCTCTTCTGATAAAAAGAAAAAGGAGGCTCTTGAGCACCTTGGAGCCGACCAATATCTAATTAGCTCAGAGGCCACTGAGATGCAGGAAGCTGCCGATTCACTTGACTACATCATCGATACTGTGCCCGTAGGTCATCCTCTCGAGCCTTATCTTTCCCTGCTCAAGGTTCACGGCAAGTTAATCTTGATGGGTGTCATAAATACCCCTCTCCAATTCGTAAGCCCCATGGTCATGCTTGGGAGGAAGACAATCACGGGAAGCTTCATCGGAAGCATAAAGGAGACGGAGGAGATGCTGGAGTTCTGGAAAGAGAAGGGTCTGAGTTCCATGATTGAAGTGGTAAAGATGGATTACATAAACAAAGCCTTCGAAAGATTGGAGAAGAACGATGTGAGATATAGGTTCGTAGTGGATGTTGCCGGCAGCAAACTTGATCAATGA 1185 0.4759 MHSPIPTYQSQLCRVVLSWLFIPFSFLFLRPFSLRSSMGSLEEEKTTIGWAARDPSGILSPYTFPLRNTGPEDVYIKVHYCGVCHSDLHQIKNDLGMSNYPMVPGHEVVGEVLEVGSNVTKFKVGQVVGAGLIVGSCRNCRSCQSDIEQYCSKKIWSYNDVYTDGKPTQGGFAETMVVDQKFVVTIPDGLAPEQVAPLLCAGVTVYSPLAHFGLKESGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKKKEALEHLGADQYLISSEATEMQEAADSLDYIIDTVPVGHPLEPYLSLLKVHGKLILMGVINTPLQFVSPMVMLGRKTITGSFIGSIKETEEMLEFWKEKGLSSMIEVVKMDYINKAFERLEKNDVRYRFVVDVAGSKLDQ 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1858 394 Pfam Zinc-binding dehydrogenase 228 349 IPR013149 -
Glsi03g1858 394 FunFam Cinnamyl alcohol dehydrogenase 201 357 - -
Glsi03g1858 394 CDD CAD1 49 386 IPR047109 GO:0016616
Glsi03g1858 394 Pfam Alcohol dehydrogenase GroES-like domain 72 185 IPR013154 -
Glsi03g1858 394 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 191 355 IPR036291 -
Glsi03g1858 394 Gene3D - 50 387 - -
Glsi03g1858 394 Gene3D - 201 357 - -
Glsi03g1858 394 FunFam Putative cinnamyl alcohol dehydrogenase 6 358 387 - -
Glsi03g1858 394 PANTHER ALDEHYDE REDUCTASE 43 389 IPR047109 GO:0016616
Glsi03g1858 394 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 105 119 IPR002328 GO:0008270|GO:0016491
Glsi03g1858 394 SMART PKS_ER_names_mod 57 385 IPR020843 GO:0016491
Glsi03g1858 394 SUPERFAMILY GroES-like 53 218 IPR011032 -
Glsi03g1858 394 FunFam probable cinnamyl alcohol dehydrogenase 50 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1858 Glsi-ChrGlsi03 80332567 80334254 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1858 38 392 Monolignol Biosynthesis Gene Families AT3G19450 77.528 0.0 530