Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi03g1850 | ATGGAGAAGGCGCTGAGAGCCTACGCGGAGGTTCTGAGGCTAGTGAGGCGTTTGCCAAAGGACACTAGACCTTATTACGCCAAGTACGCCCGTGAGAACTTCGTCAATTACCGGGATGTGGATACTGCGGATTCCACAACTCTAGAGGATCTTTTCAAACGCACCTATAATCATTCCATATGGGTCCTGGATAAGTATTCGGTTGACAAATCTGCCGCGGATAAGCTGAAGGGGATCTGCTGCAGCCGGCTGATCTGGGAATTTTTGATGGAGGAGAACAAGGAATTTGAAGGGGACCATCTGACCACAGGGACTACTTTCTCTCAGTTACTATTCGGAGATGATGATAATAATGCTGTGGGTCTTGATGTGGACCAGACTCTTCGCTATTCGTCTGTTTTCTCAATTGGGAAGACACCCAAAATGCTCTGTTTCGGGAACTATCAAAATGAGGGGGAGCTATTGCTTTCTGAAACCAACGCAACTCCACAGAAAACTGTTGTTACATGTAGTGAATCTTCCTCTGCTTCTTCCTGCAACCATAGCAGCAGCAGCTTCTTCAGTTCCTTATCTAAGTCTAATAAAAAGCGAAATGGGTCGGAGCAAGAACCGGTGCGATGCACGGACTCGGTTATCACGGCAACTGTGGGAAGCCGGAGACCTCCTAAAAAGACCAAAGCAGAGAACCCCACTTCAACCGGGCATGCAAAGAGAAAGGAGAAACTTGGGGAACGAATTGCAGCATTACAACAGCTTGTTTCTCCCTTTGGCAAGACAGATACAGCTTCGGTTCTGCACGAGGCCATGGGCTACATAAGATTTCTACATGACCAAGTTCAGGTCCTCTGCTCGCCTTACCTGCAAGGCCTGCCTTCCTCACCCCAACGCCTCCACCGCCACCACCAACCTGGGGACGGAGATAACAAGAGAGAAGATGACGCAAAGGGAGAGTTGAGGAGGAGGGGGCTGTGCCTCATCCCAGTAGAATGCACCGTACACGTGGCCAGAAGCAATGGTGCTGATTTCTGGTCACCTGCTATGGGGAATAATGTTCCGTCGTCAACAAGGCAGTAA | 1074 | 0.4953 | MEKALRAYAEVLRLVRRLPKDTRPYYAKYARENFVNYRDVDTADSTTLEDLFKRTYNHSIWVLDKYSVDKSAADKLKGICCSRLIWEFLMEENKEFEGDHLTTGTTFSQLLFGDDDNNAVGLDVDQTLRYSSVFSIGKTPKMLCFGNYQNEGELLLSETNATPQKTVVTCSESSSASSCNHSSSSFFSSLSKSNKKRNGSEQEPVRCTDSVITATVGSRRPPKKTKAENPTSTGHAKRKEKLGERIAALQQLVSPFGKTDTASVLHEAMGYIRFLHDQVQVLCSPYLQGLPSSPQRLHRHHQPGDGDNKREDDAKGELRRRGLCLIPVECTVHVARSNGADFWSPAMGNNVPSSTRQ | 357 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi03g1850 | 357 | MobiDBLite | consensus disorder prediction | 291 | 315 | - | - | |
| Glsi03g1850 | 357 | Pfam | Complex 1 protein (LYR family) | 4 | 56 | IPR008011 | - | |
| Glsi03g1850 | 357 | MobiDBLite | consensus disorder prediction | 174 | 195 | - | - | |
| Glsi03g1850 | 357 | CDD | bHLH_AtbHLH_like | 237 | 282 | IPR045239 | - | |
| Glsi03g1850 | 357 | PANTHER | OS01G0342800 PROTEIN | 1 | 81 | - | - | |
| Glsi03g1850 | 357 | CDD | Complex1_LYR_LYRM9 | 4 | 65 | IPR045291 | - | |
| Glsi03g1850 | 357 | MobiDBLite | consensus disorder prediction | 221 | 240 | - | - | |
| Glsi03g1850 | 357 | MobiDBLite | consensus disorder prediction | 174 | 240 | - | - | |
| Glsi03g1850 | 357 | Gene3D | - | 235 | 288 | IPR036638 | GO:0046983 | |
| Glsi03g1850 | 357 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 226 | 275 | IPR011598 | GO:0046983 | |
| Glsi03g1850 | 357 | MobiDBLite | consensus disorder prediction | 298 | 315 | - | - | |
| Glsi03g1850 | 357 | FunFam | Transcription factor bHLH113 | 219 | 289 | - | - | |
| Glsi03g1850 | 357 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 237 | 286 | IPR036638 | GO:0046983 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi03g1850 | Glsi-ChrGlsi03 | 80264532 | 80267975 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi03g1850 | 237 | 346 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT2G31730 | 52.727 | 2.28e-34 | 122 |