Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1845 ATGGGGGAAGACACTATTGGCATGGATGCTTCTTCAGACCAAATGAATAGCGAAAGTGGAAAATTAGCATGCCTTAACCATGATACCTCAGAACAGGTACATAAACTTGATCCTGGAACTGCTCATTTTGAACTGTCAGAAACAACCAATCAGATTGGCTCTGAATTTTTGGACAATGAAAAAAGGGTCCTTGGCACTGGTGTAACTAGCGCTCTTATTGATGAAAAGTTACATCAAGTTTCTGACAGTATGAATGGGAATTCTGTCATTCAACTGCCTGTGCCACCTCAATCTGACTTAGGCAAGAGTTGTCAGACTGGAGAAGGCTCATGCCTTCAACATCATACCTCAGAACAGGTTTCTGGTTCTTTATCTAATTATAATTCAGATAACAAATATCAGCTGGCCTCCCAAAATGTTCAAAATGAACCTGTAGAAAGAAGTGATGCCCTGACTAGCTTTTGTGTTAAAGACCAAATACAATTAGTTCCTGCAGAAGTGAACGTAAGTTATGCAAATGAACAATTGGATACACTTTCCGGAGATATTGCCAAAAGTACTAGTCCTGACTGTTTGGAAAGAAACTCTAAAAGGGCAGCTCATATCCGGTTGGGGTGCAAGGCTAAAAGAGCTTCAAAATCATTGAAGAAGAAATATATGCTAAGATCATTAGGAAGCAGTGACAGAGTTTTGCGGTCGAAGACTGGTGAAAAACCTAAAGCACCTGAGTCAAATACTAATTTGGTTAATGATGATAACAATAGAGAGAAGAGAAAAGGAAGGAAGAAGAAAAACAAGAGAAGAGGAGAGGGAATTACTAATGAATTTTCAAGAATCAAAGCTCGTCTAAGGTATTTATTGAATCGAGTGGGCTACGAGCAAAGCTTGATTGATGCTTATTCTGGTGAGGGCTGGAAAGGATATAGCATGGATAAATTAAAGCCCGAGAAGGAGCTTCAACGCGCTAAGTTCGAAATACTTCGGCGTAAATTGAAAATTAGGGATTTGTTTCGACATTTGGATACATTGTGTGCTGAAGGGAGGCTTCCAGAATCTTTGTTTGATTCTGAAGGAGAGATTGACAGTGAGGATATATTCTGTGCAAAATGCAGGTCCAAAGACTTGATTACTGATAATGATATAATACTCTGTGATGGTTCTTGTGACCGGGGATTTCACCAGTTCTGTTTAGAACCCCCATTGTTGACTGAAAACATTCCACCTGATGACGAGGGCTGGCTATGTCCAGGATGTGATTGCAAAGATGACTGCATTAAACTTCTTAATGATTCCTTAGGAACAAGTCTCTCTTTTAGTGATACCTGGGAGAGGGTTTTTCCTGAGGCAGCTGCAGTTGCTGGAAATAATGTGGATCACAAATTGGGACTTCCTTCGGATGATTCTGCTGATGATGATTATAATCCTGATGTTCCAGAAGATGAGGAAGTTGAAGGAGGCAAATCAAGTTCTGATGAATCTGAGAATGCTTCTGCTTCTGAGAAATCAGAGGCTTCAATCAATGAGGATCCTTTCTTAGGACTTCCTTCTGAAGATTCAGAAGATGATGATTTTAACCCTACTGCTCCAGATCCTGACAAGGATGTGGCTGAAGAAAGTTCAAGCTCTGATTTCACATCTGACTCTGAGGATCTTGCTGATGCAATTAAGGGTAACACATTCTCTGTACAGGATGAAAATCCCATATCTGCATCCTTGGATGATATCAAGAAGTTAAAAGGTTCTCCCCCACAAAAATGTAAAGTTGGTAAGAAGCCATCTCTAGCTAGTGAACTGTCATCCTTACTAGAGCTCGATCCTGGCCAAGAAGCTTCCACTCCTCTTTCTGGAAGAAGACAGCTGGAAAGGTTGGACTACAAAAAACTGTATGATGAGACATACCAAAATGTTCATTCTGATACTAGTGATGATGAAGATTGGACTGTCACTGCTACTTTAAATAGAAAAAAGAAATTCGCTGGAAAAGGGGCTCCAGTGTCACCAAATGGAAAAGTCTTAATGCCGGACCACTTGCTGAAAGAAGCTACACATACTCCTAGGAGAAGTACTCGTCAGAATAAAGTTGAAAATACAGCTAATTCACCAACTAAGTTGCTTGAAGGCTCTAAGAACTCTGGTTCAAACGATCAAAAGCCTGGATCTTCAACTTACAATAGACTAGGGGAAGATGCAGTTAAGATACTTTACAATTCCTTCAAAGAAAATCAGTATCCAGTCCGAGCCACAAAAGAAAGCTTGGCACAAGAACTTGGACTCACTTTCCGACAGGTAAGCAAATGGTTTGAGAACACTCGTTGGAGCTTCCGGAATTCATCGCGCATGGAAGTCAGTGCAGCTAGAAATCCTTCACAGCCTGCCTCTTCCAGCAGAGTTGAAAATGAGGGAGCACTTGGAGAAGACCATAAATTGGTGCCCCGGGAGGGGAATGTACAAAATTCAAAATCCCGAAGCTCTGGAAAGAGGAAGCATAAGTCAGATCCCCAGGCATCTGATGCAAATCAATACGTTGGTAGTGCAGCAACAAAGCCTCCTGCTGGCTCACCTAGAGTTAGTGACGGGCAAGGAGGCCACAAAATGAAAACAAAGAGAAGAAAATGA 2616 0.4125 MGEDTIGMDASSDQMNSESGKLACLNHDTSEQVHKLDPGTAHFELSETTNQIGSEFLDNEKRVLGTGVTSALIDEKLHQVSDSMNGNSVIQLPVPPQSDLGKSCQTGEGSCLQHHTSEQVSGSLSNYNSDNKYQLASQNVQNEPVERSDALTSFCVKDQIQLVPAEVNVSYANEQLDTLSGDIAKSTSPDCLERNSKRAAHIRLGCKAKRASKSLKKKYMLRSLGSSDRVLRSKTGEKPKAPESNTNLVNDDNNREKRKGRKKKNKRRGEGITNEFSRIKARLRYLLNRVGYEQSLIDAYSGEGWKGYSMDKLKPEKELQRAKFEILRRKLKIRDLFRHLDTLCAEGRLPESLFDSEGEIDSEDIFCAKCRSKDLITDNDIILCDGSCDRGFHQFCLEPPLLTENIPPDDEGWLCPGCDCKDDCIKLLNDSLGTSLSFSDTWERVFPEAAAVAGNNVDHKLGLPSDDSADDDYNPDVPEDEEVEGGKSSSDESENASASEKSEASINEDPFLGLPSEDSEDDDFNPTAPDPDKDVAEESSSSDFTSDSEDLADAIKGNTFSVQDENPISASLDDIKKLKGSPPQKCKVGKKPSLASELSSLLELDPGQEASTPLSGRRQLERLDYKKLYDETYQNVHSDTSDDEDWTVTATLNRKKKFAGKGAPVSPNGKVLMPDHLLKEATHTPRRSTRQNKVENTANSPTKLLEGSKNSGSNDQKPGSSTYNRLGEDAVKILYNSFKENQYPVRATKESLAQELGLTFRQVSKWFENTRWSFRNSSRMEVSAARNPSQPASSSRVENEGALGEDHKLVPREGNVQNSKSRSSGKRKHKSDPQASDANQYVGSAATKPPAGSPRVSDGQGGHKMKTKRRK 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1845 871 CDD PHD_PRHA_like 366 418 IPR045876 -
Glsi03g1845 871 SUPERFAMILY FYVE/PHD zinc finger 356 425 IPR011011 -
Glsi03g1845 871 Gene3D - 720 788 - -
Glsi03g1845 871 SMART PHD_3 366 419 IPR001965 -
Glsi03g1845 871 MobiDBLite consensus disorder prediction 778 871 - -
Glsi03g1845 871 MobiDBLite consensus disorder prediction 691 723 - -
Glsi03g1845 871 Pfam PHD-finger 366 421 IPR019787 -
Glsi03g1845 871 MobiDBLite consensus disorder prediction 681 724 - -
Glsi03g1845 871 SUPERFAMILY Homeodomain-like 723 781 IPR009057 -
Glsi03g1845 871 MobiDBLite consensus disorder prediction 457 592 - -
Glsi03g1845 871 MobiDBLite consensus disorder prediction 778 797 - -
Glsi03g1845 871 ProSiteProfiles 'Homeobox' domain profile. 717 777 IPR001356 GO:0003677
Glsi03g1845 871 CDD homeodomain 725 778 IPR001356 GO:0003677
Glsi03g1845 871 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 191 830 - -
Glsi03g1845 871 ProSitePatterns 'Homeobox' domain signature. 752 775 IPR017970 GO:0000981|GO:0006355
Glsi03g1845 871 MobiDBLite consensus disorder prediction 490 504 - -
Glsi03g1845 871 MobiDBLite consensus disorder prediction 526 540 - -
Glsi03g1845 871 FunFam Homeobox protein HAT3.1 347 425 - -
Glsi03g1845 871 ProSitePatterns Zinc finger PHD-type signature. 367 418 IPR019786 -
Glsi03g1845 871 MobiDBLite consensus disorder prediction 226 271 - -
Glsi03g1845 871 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 349 428 IPR013083 -
Glsi03g1845 871 ProSiteProfiles Zinc finger PHD-type profile. 364 421 IPR019787 -
Glsi03g1845 871 Pfam Homeodomain 728 772 IPR001356 GO:0003677
Glsi03g1845 871 SMART HOX_1 719 781 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1845 Glsi-ChrGlsi03 80227444 80233735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1845 224 774 Homeobox Transcription Factor Family AT3G19510 47.668 4.74e-138 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Glsi03g1845 PHD 2.6e-10 CL0390