Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1827 ATGTACCATTACTTTGACTTGGAAAAAGTCATCTCTCTCTCTCTACGTTCCTTAGTTGACCCACTTCACTCTCCCACCCCTTCACCAACTCTCTCCCCTTTCTTTCTCCCTTCCCTTCTTTTTCCTTCTCTTTTTCCCCCCTTCATTTGCATTCATTCTTCTTATATAAACTCCCTTTGCTCACACCCACTTCCTCATTCACTCACTCTCTCTCTCTCTCTCTCTATTTCTGATTCATTTCTACTCTTCACAGCCATTCTCACTCTCTCTCTCTCTCTTCGTTCGATGGCTTTAGAGGCTCTGAATTCTCCAACCACAGCCACAATCCCCTTCCCCTATGAAGAAGATGAGGTTGACGACCTTCACTTCCTTGAGCCGTGGGCTAAGAGGAGGCGCTCTAAACGACCTCGTCTCGACCACCCACCGTCAGAAGAAGAGTACCTTGCCCTCTGCCTCATCATGCTCGCTCATAGCGGCAACAATAATAAGGACAGCAAAAAGCCCTCTCTCCAACAGTCGTCACAACCAGAAGAAGCCACACCGCCTGTGAAGCTCCCTCACAGATGCACCGTCTGCGACAGAGCCTTTGCATCTTACCAAGCCCTCGGTGGCCACAAGGCCAGCCACCGCAAGTCCTCATCCGAATCCGCCGACAACGCTTCCACCTCCACCACCGCCTCCGCAGCCGCCGCCACTGGCAGGATGCACGAGTGTTCCATCTGCCACAAGGCTTTCCCTACTGGCCAGGCCTTGGGTGGCCACAAACGTTGCCACTACGATGGCGGCAGCCACGGGAACAACAGCAGCGGCGTAACTACTTCTGAGGGGGCCGTCTCCACCCAGAGCCACCGGGGATTTGACTTGAACCTGCCGGCACCCTTGACCGACTTCTTGCCAGCGAGGTTCGGCGGCGGAGATTCCATGAAGAAGAGTATAATTAAAAGTGTAGAGCAAGAGGTGGAAAGCCCGTTAGCGGTAGCCGCTAAGAAACCCCGTTTGTTCTTGCTGGGTGAAGAAGAAGACCATGTACCTTCGTCACAGAATTGA 1047 0.5291 MYHYFDLEKVISLSLRSLVDPLHSPTPSPTLSPFFLPSLLFPSLFPPFICIHSSYINSLCSHPLPHSLTLSLSLSISDSFLLFTAILTLSLSLRSMALEALNSPTTATIPFPYEEDEVDDLHFLEPWAKRRRSKRPRLDHPPSEEEYLALCLIMLAHSGNNNKDSKKPSLQQSSQPEEATPPVKLPHRCTVCDRAFASYQALGGHKASHRKSSSESADNASTSTTASAAAATGRMHECSICHKAFPTGQALGGHKRCHYDGGSHGNNSSGVTTSEGAVSTQSHRGFDLNLPAPLTDFLPARFGGGDSMKKSIIKSVEQEVESPLAVAAKKPRLFLLGEEEDHVPSSQN 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1827 348 ProSitePatterns Zinc finger C2H2 type domain signature. 189 209 IPR013087 -
Glsi03g1827 348 ProSitePatterns Zinc finger C2H2 type domain signature. 238 258 IPR013087 -
Glsi03g1827 348 MobiDBLite consensus disorder prediction 214 228 - -
Glsi03g1827 348 MobiDBLite consensus disorder prediction 161 179 - -
Glsi03g1827 348 SUPERFAMILY beta-beta-alpha zinc fingers 186 258 IPR036236 -
Glsi03g1827 348 ProSiteProfiles Zinc finger C2H2 type domain profile. 236 258 IPR013087 -
Glsi03g1827 348 SMART c2h2final6 236 258 IPR013087 -
Glsi03g1827 348 SMART c2h2final6 187 209 IPR013087 -
Glsi03g1827 348 MobiDBLite consensus disorder prediction 203 228 - -
Glsi03g1827 348 Gene3D Classic Zinc Finger 185 258 - -
Glsi03g1827 348 ProSiteProfiles Zinc finger C2H2 type domain profile. 187 214 IPR013087 -
Glsi03g1827 348 MobiDBLite consensus disorder prediction 161 185 - -
Glsi03g1827 348 Pfam C2H2-type zinc finger 187 211 - -
Glsi03g1827 348 Pfam C2H2-type zinc finger 236 260 - -
Glsi03g1827 348 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 131 292 IPR044653 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1827 Glsi-ChrGlsi03 80101610 80102656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1827 96 333 C2H2 Transcription Factor Family AT1G27730 44.314 2.85e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi03g1827 zf-C2H2_6 7.1e-12 CL0361