Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1823 ATGGAGCATGCTGAGCAGATTTCTGAAGAATGGAGTTCCCTCAGTGGATTTTACACAGCTGAGGAAGCTGACTTCATGACCCAGTTGCTTAGTAACTGTTTAGTCCCTCAGGAGCTCTATGGAAATGCTAACTTGGGAATTTCATCTGCATTTTGGCCCAGCCATGAGTCCACAATAGTCAGCGTGACAGGCAACAGTGATAGTTTGTATTTTCCTTCAAATGCTGCTAGTACTGATAGTACTAATATCTTTGCCACTACCAATGTTGGAAACTACTCCTTGAATGGTCCAGTTACCAACTTTGGCTCCATGTCCATGGGTTTTTCTTTGGGGGATGCCAAATTTAGCCCATATAGTGTTCAATTTAGCCAACAGATAAATGAAAACACTGATGAAGATTCAGGTCCAGACCCAGGAAAAGAGGTTCTTTCTGACAATAATTTGCAGGATAAAAGGGATTGTCAAATACTAGTCTCTGAACCAGCAGAAGAGGATAAAAGCAGCAACATGGAGAACTCAGCAAAAAGATCTAGGAGCTCAAAAGAGATTTCAAAGAACAGGAGGAATCTTAAATCCAAGAAGAATCCAAAATCATCCTCTACAAACAAAAAGGAAGAGGATAAAAGCCATGGCCTTCAGGGGCAGAACTCGAGCAGCTGCTGCTCATCAGATGATGACTCCAGTGCTTCTCAGGAGCTAAATGGAGGGACATCTTCATGTTTGAGCCCGAAAAGTAATACGGCTCTCAAGTCTAATGGCAAATCAAGGTCTAATAGAGGTGCTGCCACTGATCCACAGAGCCTCTACGCAAGAAGAAGAAGAGAAAGAATAAACGAAAGGTTGAGAATCCTACAAAACCTTGTCCCAAATGGAACAAAGGTTGATATCAGCACCATGCTTGAGGAAGCTGTCCAATATGTGAAGTTCTTACAGCTCCAAATTAGGCTCCTGAGCTCCGATGATCTGTGGATGTACGCTCCTATTGCTTACAACGGACTGAACATTGGACTGGACCTCAATATCACCGCAACCAAACAACCATAG 1044 0.4301 MEHAEQISEEWSSLSGFYTAEEADFMTQLLSNCLVPQELYGNANLGISSAFWPSHESTIVSVTGNSDSLYFPSNAASTDSTNIFATTNVGNYSLNGPVTNFGSMSMGFSLGDAKFSPYSVQFSQQINENTDEDSGPDPGKEVLSDNNLQDKRDCQILVSEPAEEDKSSNMENSAKRSRSSKEISKNRRNLKSKKNPKSSSTNKKEEDKSHGLQGQNSSSCCSSDDDSSASQELNGGTSSCLSPKSNTALKSNGKSRSNRGAATDPQSLYARRRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIRLLSSDDLWMYAPIAYNGLNIGLDLNITATKQP 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1823 347 MobiDBLite consensus disorder prediction 156 186 - -
Glsi03g1823 347 FunFam Basic helix-loop-helix transcription factor 262 319 - -
Glsi03g1823 347 Gene3D - 260 317 IPR036638 GO:0046983
Glsi03g1823 347 MobiDBLite consensus disorder prediction 127 268 - -
Glsi03g1823 347 MobiDBLite consensus disorder prediction 212 264 - -
Glsi03g1823 347 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 122 319 IPR045843 GO:0003700|GO:0006355
Glsi03g1823 347 SMART finulus 267 316 IPR011598 GO:0046983
Glsi03g1823 347 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 259 326 IPR036638 GO:0046983
Glsi03g1823 347 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 261 310 IPR011598 GO:0046983
Glsi03g1823 347 MobiDBLite consensus disorder prediction 133 148 - -
Glsi03g1823 347 Pfam Helix-loop-helix DNA-binding domain 271 311 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1823 Glsi-ChrGlsi03 80082381 80083922 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1823 10 337 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 40.055 4.51e-62 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi03g1823 HLH 8e-09 No_clan